View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_19 (Length: 458)
Name: NF1545_low_19
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 451
Target Start/End: Original strand, 39087113 - 39087571
Alignment:
| Q |
16 |
tgaatatgccaaaacttgtttttgatgatagttattcaccacaaggcctaagcatcgatcaaccttatctatcatt-------tatc----------ttc |
98 |
Q |
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| T |
39087113 |
tgaatatgccaaaacttgtttttgatgatagtgattcaccacaaggcatacgcatcgatcaaccttatctatcattcttaatttatccttcctacttttc |
39087212 |
T |
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| Q |
99 |
caacaagtttgataacatgaaaaatagttttaatcctctccaggttcgggtactaaacacacatgtgcaacaatggaatccaaaaaacagtggaaaaagg |
198 |
Q |
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| T |
39087213 |
caacaagtttgataacatgaaaaatagttttaatcctctccaggttcgggtactgcacacacatgtgcaacaatggaatccaaaaaacagtgtaaaaagg |
39087312 |
T |
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| Q |
199 |
tctccaaatgaaaaatatatgtaattgctttattgattctatattagtagcatttacaacttgttgtataaacatatatgtatatacattaataatttac |
298 |
Q |
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| T |
39087313 |
tctccaaatgaaaaatatatgtaattgctttattgattctatattagtagcatttacaacttgttgtataaacatatatgtatatacattaataatttac |
39087412 |
T |
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| Q |
299 |
caaggcagaagactagatatattacaaannnnnnnngggtatgcaacactccaattagtagtacaaacagaca-------tttttctagtttgtatattt |
391 |
Q |
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| T |
39087413 |
caaggcagaagactagatatattac-aattttttttgggtatgcaacactccaattagtagtacaaacaaacaaacaaacattttctagtttgtatattt |
39087511 |
T |
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| Q |
392 |
tcttaatagatcttcattggatcctctctcaagttgtccatcttcgctgagcctatgctt |
451 |
Q |
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| T |
39087512 |
tctcaatagatcttcattggattctctctcaagttgtccatcttcgctgagtctatgctt |
39087571 |
T |
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