View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_20 (Length: 450)
Name: NF1545_low_20
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 402
Target Start/End: Original strand, 1021975 - 1022367
Alignment:
| Q |
10 |
gagatgaagttatcgccggtttgaagtcatcggaaaaatcaccggagtttgttgccggcgttgaggatcctgtgagaaaagacgaggaggtgaatgtgga |
109 |
Q |
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| T |
1021975 |
gagatgaagttatcgccggtttgaagtcatcggaaaaatcaccggagtttgttgccggcgttgaggttccggtgagaaaagacgaggaggtgaatgtgga |
1022074 |
T |
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| Q |
110 |
aaaggtgaagatgaagcataaggatttgaaagagattgttgaagtgataagagataattttgagaaagcggcggtggccggagatcggttatcggagatg |
209 |
Q |
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| T |
1022075 |
aaaggtgaagatgaagcataaggatttgaaagagattgttgaagtgataagagataattttgagaaagcggcggtggccggagatcggttatcggagatt |
1022174 |
T |
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| Q |
210 |
ttgcagattagtagggctcaacttgatcggagtttcagtcaattgaagagtaagacttttattttgaaagtgtttgcttactgagaaagtgcgggaaaat |
309 |
Q |
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| T |
1022175 |
ttgcagattagtagggctcaacttgatcggagtttcagtcaattgaagagtaagacttttattttgaaagtgtttgcttactgagaaagtgcgggaaaat |
1022274 |
T |
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| Q |
310 |
tttataattcatttcatttaatccnnnnnnnttatttgtctttattatctcaatttaaatttaaatgtgattaagcttaatttacatttatat |
402 |
Q |
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| T |
1022275 |
tttataattcatttcatttaatccaaaaaaattatttgtctttattatctcaatttaaatttaaacgtgattaagcttaatttacatttatat |
1022367 |
T |
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