View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_21 (Length: 444)
Name: NF1545_low_21
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 29643494 - 29643179
Alignment:
| Q |
18 |
atatatgattaccatttttaggttattac-------agatcaatacaaaaaagggttttggttggttggttgtacctctcatgttagattcaaacataac |
110 |
Q |
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| T |
29643494 |
atatatgattaccatttttaggttattacttattacagatcaatacaaaaaacggttttggttggttggttgtacctctcatgttagattcaaacataac |
29643395 |
T |
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| Q |
111 |
aggatgcaaactctttttattgtatggaatgaatgggttactatatatgttcttaattaattttctgtatcaagttcttgtatctgaaatttaattagta |
210 |
Q |
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| T |
29643394 |
aggatgcaaactctttttatcgtatggaatgaatgggttac----tatgttcttaattaattttctgtatcaatttcttgtatctgaaattttatttgta |
29643299 |
T |
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| Q |
211 |
-nnnnnnnaattaggcactgatggacagacagatatgaagctcatctgtgggacattagaatttagaagtatatttgatatttttgtctttctccatttc |
309 |
Q |
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| T |
29643298 |
tttcttttaattaggcactgatggacagacagatatgaagctcatctgtgggacactagaatttagaagtatatttgatatttttgtctttctccatttc |
29643199 |
T |
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| Q |
310 |
aatcataatactttatttta |
329 |
Q |
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| T |
29643198 |
aatcataatactttatttta |
29643179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 29642854 - 29642792
Alignment:
| Q |
370 |
ttgttttctattagttatacacacgatatgatcaagttcgaactttgaaggcatacttatatt |
432 |
Q |
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| T |
29642854 |
ttgttttctattagttatacacacaatatgatcaagtttgaactttgaaggcatacttatatt |
29642792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 29642771 - 29642723
Alignment:
| Q |
158 |
tgttcttaattaattttctgtatcaagttcttgtatctgaaatttaatt |
206 |
Q |
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| T |
29642771 |
tgttcttaattaattttttgtatagatttcttgtatctgaattttaatt |
29642723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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