View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_23 (Length: 436)
Name: NF1545_low_23
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 259 - 428
Target Start/End: Original strand, 78162 - 78329
Alignment:
| Q |
259 |
ctcaattaatgactccatttttgttcaattttcaagaataaaaattcaactttgccattctacctttcattcgtacaattctcaatacactctccattct |
358 |
Q |
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| T |
78162 |
ctcaattaat-actccatctttgttcaattttcaagaataaaatttcaactttgccattctaccttttattcgtacaattctcaatacactctccattct |
78260 |
T |
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| Q |
359 |
tattgtctttttcaattcattttccaaattgtctcatgactcacatctatttcttcttctttttcatttc |
428 |
Q |
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| T |
78261 |
tattgtctttttcaattca-tttccagattgtctcatgactcacatctatttcttcttctttttcatttc |
78329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 56194 - 56322
Alignment:
| Q |
120 |
atctttatatctaatcctagagtacaatgaaaacataatttgcaaaccctaaacctaatccattttggcggcaacttttcaaatttgattatcataagtg |
219 |
Q |
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| T |
56194 |
atctttatatctaatcctagagtacaatgcaaaaataatttgtaaaccctaaacctaatccattttggcggtaacttttcaaatttgattatcataagtg |
56293 |
T |
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| Q |
220 |
catggttacaagagatacctcccaaccaa |
248 |
Q |
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| T |
56294 |
catggttacaagagatacctcccaaccaa |
56322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 37547529 - 37547409
Alignment:
| Q |
1 |
tttaagaaaatttcataatattatatagagtaagttctaccttcaaacctctgaataattgaatgtagaacttactctaagtatgagtgtggtagatata |
100 |
Q |
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| T |
37547529 |
tttaagaaaatttcataatattatatagagtaagttctaccttcaaacctctgaataattgaatgtagaacttactttaagtatgagtgtggtagatata |
37547430 |
T |
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| Q |
101 |
ttataatgatcagaatattat |
121 |
Q |
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| T |
37547429 |
ttataatgatcagaatattat |
37547409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 37547416 - 37547382
Alignment:
| Q |
17 |
aatattatatagagtaagttctaccttcaaacctc |
51 |
Q |
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| T |
37547416 |
aatattatatagagtaagttctaccttcaaacctc |
37547382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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