View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_29 (Length: 385)
Name: NF1545_low_29
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 14880387 - 14880180
Alignment:
| Q |
11 |
catcatcaaggcaagtatgtgatcttcttctacatgtatccaagaacaaaaaagtggagtttgacaagatgaagatggattcgtacaactgaaattattt |
110 |
Q |
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| T |
14880387 |
catcatcaaggcaagtatgtgatcttcttctacatgtatcctagaacaaaaaagtggagtttgacaagatgaagatggattcgtacaactgaaattattt |
14880288 |
T |
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| Q |
111 |
ctcctttggattgatgaaaaagtggctttaaataacattgatttttactggcttttgtttaatgtttctgttcttgattttatttagttattgtagtatt |
210 |
Q |
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| T |
14880287 |
ctcctttggattgatgagaaagtggctttaaataacattgatttttactggcttttgtttaatgtttctgttcttgattttatttagttattgtagtatt |
14880188 |
T |
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| Q |
211 |
tcaattta |
218 |
Q |
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|||||||| |
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| T |
14880187 |
tcaattta |
14880180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 207 - 371
Target Start/End: Original strand, 14883320 - 14883484
Alignment:
| Q |
207 |
tatttcaatttaaagggttaccagaaagaactaagtattgtaacctagacatgttggtaaactcttttggaatttctccactgaatttgttcgttgacaa |
306 |
Q |
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|||||| || |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14883320 |
tatttccatataaagggttaacagaaagaactaagaattgtaacctagacatgttggtaaactctcttggaatttctccactgaatttgttcgttgacaa |
14883419 |
T |
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| Q |
307 |
gtcaagatctacaagattacccaattgagatagagaaattggaatgtgaccctcaagtttgtttt |
371 |
Q |
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| T |
14883420 |
gtcaagatctacaagattacccaattgagatagagaaattggaatgtgaccctcaagtttgtttt |
14883484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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