View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_3 (Length: 613)
Name: NF1545_low_3
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 29 - 600
Target Start/End: Original strand, 38681776 - 38682349
Alignment:
| Q |
29 |
cattacccaaagtcaaaacctaaaacacacatagatcaaccacaatttttctctttttcatatatggatcactagaagaacgaaataaggaatgacctca |
128 |
Q |
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| T |
38681776 |
cattacgcaacgtcaatacctaacacagacattgatcaagcactatttttttctttttcatatatggaaaaaaagaagaatgaagtaaggaatgacctca |
38681875 |
T |
|
| Q |
129 |
atgacaagcaggacnnnnnnnnnnnnnnnnnnatggaaattgagaagttttgctcgctgctaagatgcttccgtgacgcccgtgatcgattgcgccggag |
228 |
Q |
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| T |
38681876 |
acgacaagcagga---agaagaagaagaagagatggaaatagagaagttttgctcgctgctaagaagcttccgtgacgcccgtgatcgattgcgccggag |
38681972 |
T |
|
| Q |
229 |
ggaatcagaattacatgatcagctggaaaaatacgagagcaacaagaaaaagatgaaaacagagccgccttgttttgaattgcaggactttactacagat |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38681973 |
ggaatcagaattacatgatcagctggaaaaatacgagagcaacaagaaaaagatgaaaacagagccgccttgttttcaattgcaggactttactacagat |
38682072 |
T |
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| Q |
329 |
attcaattcagaaaactacctttgaattttctcaacccagttgcaaattacacaatcgtagataataacaaagttgagaagaaggaacatacccttgacc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38682073 |
attcaattcagaaaactacctttgaattttctcaacccagttgcaaattacacaatcgtagataataacaaagttgagaagaaggaacatacccttgacc |
38682172 |
T |
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| Q |
429 |
tcaaacttgctctttaatcttgcattcatcattcatgatcgtcttgttttaattaattacgttatttatgctttttctgtctacctagctattccttgta |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38682173 |
tcaaacttgctctttaatcttgcattcatcattcatgatcgtcttgttttaattaattacgttatttatgctttttctgtctacctagctattccttgta |
38682272 |
T |
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| Q |
529 |
c-----atataatataatattcatgtattgaagaaatcatatatatcttcatctatcatctatgttatgtaatttct |
600 |
Q |
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| T |
38682273 |
catataatataatataatattcatgtattgaagaaatcatatatatcttcatctatcatctatgttatgtaatttct |
38682349 |
T |
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