View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_30 (Length: 369)
Name: NF1545_low_30
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 39424900 - 39425185
Alignment:
| Q |
18 |
atctatatgattgcctcctcctcttgatctatggataaggtaattatagttagtttaataacnnnnnnnnnnnagaattaatttt--gagtttagctcgg |
115 |
Q |
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| T |
39424900 |
atctatatgattgcctcctcctcttgatccatggataaggtaattatagttagtttaataa---attttttttagaattaatcctacgagtttagctcgg |
39424996 |
T |
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| Q |
116 |
ttgatatagactttgtataatatatgtaagagttggtggttcgaacttcaaacatttcacttattcatcaaaaaatgtggatttctagccattaaacaac |
215 |
Q |
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| T |
39424997 |
ttgatatagactttgtataatatatgtaggagttggtggttcgaacttcaaacatttaacttattcatcaaaaaaggtggatttatagccactaaataac |
39425096 |
T |
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| Q |
216 |
tt--acaaaaataaaatctttagaaatagcttagatgacggcatgatgatttgcaaattggatctatgcgatcaactttatacgatgca |
302 |
Q |
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| T |
39425097 |
ttaaaaaaaaataaaatctttagaaatagcttagatgacggcatgatgatttgcaaattggatctatgtgatcaactttatacgatgca |
39425185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 29321673 - 29321621
Alignment:
| Q |
154 |
gttcgaacttcaaacatttcacttattcatcaaaaaatgtggatttctagcca |
206 |
Q |
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| T |
29321673 |
gttcgaacttcaatcacttcacttattcatttaaaaaagtgaatttctagcca |
29321621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 182
Target Start/End: Original strand, 30350565 - 30350595
Alignment:
| Q |
152 |
tggttcgaacttcaaacatttcacttattca |
182 |
Q |
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| T |
30350565 |
tggttcgaacttcaaacatttcacttattca |
30350595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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