View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_31 (Length: 354)
Name: NF1545_low_31
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 46238455 - 46238750
Alignment:
| Q |
18 |
aggtgacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctcc |
117 |
Q |
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| T |
46238455 |
aggtgacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctcc |
46238554 |
T |
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| Q |
118 |
agttgctgatgtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggta |
217 |
Q |
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| T |
46238555 |
agttgctgatgtaagttgtctattatgtgaatccctttactttcctctgtttactcctatgaatatgcatgctatttctttgtttattcttgttgtggta |
46238654 |
T |
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| Q |
218 |
ctgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgttatgttgtttgtctattgtgg |
313 |
Q |
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| T |
46238655 |
ctgttaacgaggaaaaggaggaaaacgttaaagatgttgtgaattttttagggtttttaattgatgtgaacttgttatgttgtttgtctattgtgg |
46238750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 3456203 - 3455908
Alignment:
| Q |
18 |
aggtgacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctcc |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
3456203 |
aggtgacgccgaaagaaggagagaagacgaacgaagttgcgaagaagatgcaggaaacaatcgaagggcaatcgacggttatgaaaaacgttggagctcc |
3456104 |
T |
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| Q |
118 |
agttgctgatgtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3456103 |
agttgctgatgtaagttgtctattatgtgaatccctttactttcttctgtttactcctaagaatatgcatgctatttctttgtttattcttgttgtggta |
3456004 |
T |
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| Q |
218 |
ctgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgttatgttgtttgtctattgtgg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3456003 |
ctgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggttttaaattgatgtgaacttgttatgttgtttgtctattgtgg |
3455908 |
T |
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