View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_33 (Length: 345)
Name: NF1545_low_33
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 40623517 - 40623831
Alignment:
| Q |
16 |
atcagggctaacaaagtccaaagatgttggtggatttaccaaaatgacatcttcatcatcatcaacttcagggtcatctaagagagctagagctattaac |
115 |
Q |
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| T |
40623517 |
atcagggctaacaaagtccaaagatgttggtggatttaccaaaatgacatcttcatcatcatcaacttcagggtcatctaagagagctagagctattaac |
40623616 |
T |
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| Q |
116 |
aatgggactcagatagtttcatgtcttgtggatggttgtcaagctgatcttagtaactgtagagactatcataggcgtcataaggtctgtgaacttcatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40623617 |
aatgggactcagatagtttcatgtcttgtggatggttgtcaagctgatcttagtaactgtagagactatcataggcgtcataaggtctgtgaacttcatt |
40623716 |
T |
|
| Q |
216 |
ccaagactgcacaggtcacaattggtggacataagcaaaggttctgccagcaatgtagcaggttcttttttcttatccataagctttttgtgtttcactt |
315 |
Q |
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| T |
40623717 |
ccaagactgcacaggtcacaattggtggacataagcaaaggttctgccagcaatgtagcaggttcttttttcttatccataagctttttgtgtttcactt |
40623816 |
T |
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| Q |
316 |
tagtgtgctaatgag |
330 |
Q |
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||||||||||||||| |
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| T |
40623817 |
tagtgtgctaatgag |
40623831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 27511881 - 27512125
Alignment:
| Q |
16 |
atcagggctaacaaagtccaaagatgttggtggatttaccaaaatgacatcttcatcatcatcaacttcagggtcatctaagagagctagagctattaac |
115 |
Q |
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| T |
27511881 |
atcagggcttacaaagtccaaagatgttggtggatttaccaaaataacatcttcatcatcttcaacttcagggtcatctaagaaagctagagctattaac |
27511980 |
T |
|
| Q |
116 |
aatgggactcagatagtttcatgtcttgtggatggttgtcaagctgatcttagtaactgtagagactatcataggcgtcataaggtctgtgaacttcatt |
215 |
Q |
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| T |
27511981 |
aatggaactcagatagtttcaagtcttgcggatggttgtcaagctgatcttagtaactatagaggatatcatatgcgccataaggtctgcaaacttcatt |
27512080 |
T |
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| Q |
216 |
ccaagactgcacaggtcacaattggtggacataagcaaaggttct |
260 |
Q |
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| T |
27512081 |
caaagacttcacaggtgacacttggtggacataagcaaaggttct |
27512125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 27270476 - 27270398
Alignment:
| Q |
16 |
atcagggctaacaaagtccaaagatgttggtggatttaccaaaatgacatcttcatcatcatcaacttcagggtcatct |
94 |
Q |
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| T |
27270476 |
atcagggcttacaaagtccaaagatgttggtggatttaccaaaatgaaatcttcatcatcttcaacttcagggtcatct |
27270398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 130 - 278
Target Start/End: Original strand, 45410581 - 45410729
Alignment:
| Q |
130 |
agtttcatgtcttgtggatggttgtcaagctgatcttagtaactgtagagactatcataggcgtcataaggtctgtgaacttcattccaagactgcacag |
229 |
Q |
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|||||| |||||||||||||| || | ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| || || |
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| T |
45410581 |
agtttcttgtcttgtggatgggtgcaattctgatcttagtaattgtagagattatcataggcgtcataaggtttgtgaacttcattccaagactccagag |
45410680 |
T |
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| Q |
230 |
gtcacaattggtggacataagcaaaggttctgccagcaatgtagcaggt |
278 |
Q |
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|| |||||| |||| | ||| |||||||||||||| || |||||||||| |
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| T |
45410681 |
gttacaatttgtggccttaaacaaaggttctgccaacagtgtagcaggt |
45410729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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