View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_35 (Length: 329)
Name: NF1545_low_35
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 44632601 - 44632828
Alignment:
| Q |
13 |
tgagctaggatcatccaattttggaacataaacctaattcattatccaattaaccaatatattaataaaatttcattgatatgaaacatcaatgaattac |
112 |
Q |
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| T |
44632601 |
tgagctaggatcatccaattttggaacataaacctaattcattatccaattaaccaatatattaataaaatttcattgatatgaaacatcaatcaattac |
44632700 |
T |
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| Q |
113 |
aaattatcttacttaacaattcaaaaagccaaatgacatcttcaattcatctaaatcatattataatag-----------tacgattcaacaaggttaaa |
201 |
Q |
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| T |
44632701 |
aaattatcttacttaacaattcaaaaagccaaatgacatcttcaattcatcgaaatcatattataatagtcattacaatatacaattcgacaaggttaaa |
44632800 |
T |
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| Q |
202 |
gtgatttattttagacaaagttacgcat |
229 |
Q |
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| T |
44632801 |
gtgatttattttagacaaagttacgcat |
44632828 |
T |
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