View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1545_low_36 (Length: 324)

Name: NF1545_low_36
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1545_low_36
NF1545_low_36
[»] chr7 (11 HSPs)
chr7 (54-324)||(39622740-39623010)
chr7 (203-324)||(39565342-39565463)
chr7 (233-324)||(39589968-39590059)
chr7 (203-324)||(39348294-39348415)
chr7 (203-322)||(39539095-39539214)
chr7 (9-56)||(39626634-39626681)
chr7 (234-324)||(39548463-39548553)
chr7 (203-324)||(39365096-39365217)
chr7 (203-324)||(39336994-39337115)
chr7 (218-324)||(39575731-39575837)
chr7 (54-121)||(39575932-39575999)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 54 - 324
Target Start/End: Complemental strand, 39623010 - 39622740
Alignment:
Q  54 cctgcaatgtatggacagaatgccttgttgaataatgagttccaagggaagacatggagacatgtatgttattcactgatcaatatcttcatttatgtgc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39623010 cctgcaatgtatggacagaatgccttgttgaataatgagttccaagggaagacatggagacatgtatgttattcactgatcaatatcttcatttatgtgc 39622911  T
Q  154 ctctttatcacacaaattaatcacttgtctggatatctttgtgtttttctgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaa 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622910 ctctttatcacacaaattaatcacttgtctggatatctttgtgtttttctgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaa 39622811  T
Q  254 tctcgtggattctttactcagtccaactggtattggataggttttggtgccttgattggatacacattact 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39622810 tctcgtggattctttactcagtccaactggtattggataggttttggtgccttgattggatacacattact 39622740  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 324
Target Start/End: Complemental strand, 39565463 - 39565342
Alignment:
Q  203 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 302  Q
    ||||||||| | || |||||||| || || ||||||||| |||||||||||||||| |||||||| ||| ||||  ||||||| ||||||||| ||||||    
T  39565463 tgaaaggttctgcctaactcaactgagccgctaggagttgaagttttgaaatctcgcggattcttcactgagtcatactggtactggataggtgttggtg 39565364  T
Q  303 ccttgattggatacacattact 324  Q
    | ||||||||||| ||||||||    
T  39565363 ctttgattggatatacattact 39565342  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 233 - 324
Target Start/End: Complemental strand, 39590059 - 39589968
Alignment:
Q  233 ctaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtgccttgattggatacacattact 324  Q
    ||||||||| || ||||||||||||| || ||||||||||||||  |||||||||||||||||||||| ||  |||||||||||||||||||    
T  39590059 ctaggagttgaaattttgaaatctcgagggttctttactcagtcttactggtattggataggttttggagcaatgattggatacacattact 39589968  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 324
Target Start/End: Original strand, 39348294 - 39348415
Alignment:
Q  203 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 302  Q
    ||||||||| | || |||||||| ||| ||||||||||| ||||||||||||||||  | ||||||||| || |  | |||||||||||| || ||||||    
T  39348294 tgaaaggttcttcctaactcaaccgaatcactaggagttgaagttttgaaatctcgcagtttctttactgagacatattggtattggatatgtgttggtg 39348393  T
Q  303 ccttgattggatacacattact 324  Q
    | ||||||||||| ||||||||    
T  39348394 ctttgattggatatacattact 39348415  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 39539214 - 39539095
Alignment:
Q  203 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 302  Q
    ||||||||| | || |||||||| |||||  |||||||| |||||||||||||||  |||||||||| | || |  ||||||| ||||||||| ||||||    
T  39539214 tgaaaggttctccctaactcaacggaaccgataggagttgaagttttgaaatctcacggattctttagtgagccatactggtactggataggtgttggtg 39539115  T
Q  303 ccttgattggatacacatta 322  Q
    | ||||||||||| ||||||    
T  39539114 ctttgattggatatacatta 39539095  T

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Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 39626681 - 39626634
Alignment:
Q  9 acgatgaaagtatatgaaagtgtgatgatgccttgcagagagcatcct 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39626681 acgatgaaagtatatgaaagtgtgatgatgccttgcagagagcatcct 39626634  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 39548553 - 39548463
Alignment:
Q  234 taggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtgccttgattggatacacattact 324  Q
    |||||||| |||||||||||||||| |||| ||| ||| ||||  ||||||| ||||||||| ||||||| ||||||||||| ||||||||    
T  39548553 taggagttgaagttttgaaatctcgcggatacttcactgagtcatactggtactggataggtgttggtgctttgattggatatacattact 39548463  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 324
Target Start/End: Original strand, 39365096 - 39365217
Alignment:
Q  203 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 302  Q
    ||||||||| | || |||||||| | | ||||||||||| ||||||||||||||||  | ||||||||| || |  | |||||||||||| || ||||||    
T  39365096 tgaaaggttcttcctaactcaaccggatcactaggagttgaagttttgaaatctcgcagtttctttactgagacatattggtattggatatgtgttggtg 39365195  T
Q  303 ccttgattggatacacattact 324  Q
    | ||||||||||| ||||||||    
T  39365196 ctttgattggatatacattact 39365217  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 324
Target Start/End: Original strand, 39336994 - 39337115
Alignment:
Q  203 tgaaaggttgtaccgaactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtg 302  Q
    ||||||||| | || |||||||| ||| |||| |||||| ||||||||||||||||  | ||||||||| || |  | ||||| |||||| || ||||||    
T  39336994 tgaaaggttcttcctaactcaaccgaatcacttggagttgaagttttgaaatctcgcagtttctttactgagacatattggtactggatatgtgttggtg 39337093  T
Q  303 ccttgattggatacacattact 324  Q
    | ||||||||||| ||||||||    
T  39337094 ctttgattggatatacattact 39337115  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 324
Target Start/End: Complemental strand, 39575837 - 39575731
Alignment:
Q  218 aactcaacagaaccactaggagttcaagttttgaaatctcgtggattctttactcagtccaactggtattggataggttttggtgccttgattggataca 317  Q
    ||||||||  |||| ||||||||| | |||||| |||||||||| |||||||| |||||  |||||||||||||| ||||||  || ||| | ||||| |    
T  39575837 aactcaactaaaccgctaggagttgatgttttggaatctcgtgggttctttacacagtcatactggtattggatatgttttgcggcattgctcggatata 39575738  T
Q  318 cattact 324  Q
    |||||||    
T  39575737 cattact 39575731  T

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Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 39575999 - 39575932
Alignment:
Q  54 cctgcaatgtatggacagaatgccttgttgaataatgagttccaagggaagacatggagacatgtatg 121  Q
    |||| |||||||| |||||||| |||  ||||||| ||||||| ||| ||||||||||||||||||||    
T  39575999 cctgtaatgtatgcacagaatggcttagtgaataacgagttcctaggaaagacatggagacatgtatg 39575932  T

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