View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_38 (Length: 319)
Name: NF1545_low_38
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 2021765 - 2022068
Alignment:
| Q |
1 |
gtgctgcctccactttcattcattgttactcatgaaactatgttgtattgtagtatatatcaatacagcctactgttgctgcctataacctatagaatag |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2021765 |
gtgctgcctccactttcattgattgttactcatgaaattatgttgtattgtagtatatatcaatacagcctactgttgctgcctataacctatagaatag |
2021864 |
T |
|
| Q |
101 |
cagtcctaacaaccagttattctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacctaatcataac |
200 |
Q |
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||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2021865 |
cagtcctaagaaacagttgttctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacgtaatcataac |
2021964 |
T |
|
| Q |
201 |
caacttttgatcaataaagaatattcatattctctttctcaaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttc |
300 |
Q |
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| T |
2021965 |
caacttttgatcaataaagaatattcatattctctttctcaaagatagcttaggtttctactgtattgaacatcgattatttaactcgatactggtgttc |
2022064 |
T |
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| Q |
301 |
cttc |
304 |
Q |
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|||| |
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| T |
2022065 |
cttc |
2022068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 1990210 - 1990494
Alignment:
| Q |
8 |
ctccactttcattcattgttactcatgaaactatgttgtattgtagtatatatcaatacagcctactgttgctgcctataacctatagaatagcagtcct |
107 |
Q |
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|||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| |||| ||||||| |
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| T |
1990210 |
ctccactttcattcatggttattcgtgaaactatgttgtattgtagtatatatcaatacagcctactttagctgtgtataacctataaaataacagtcct |
1990309 |
T |
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| Q |
108 |
aacaaccagttattctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacctaatcataaccaacttt |
207 |
Q |
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| T |
1990310 |
aacaaacagttattctcattgtaacgaactgaatcaaataagttagagggatttgatc------------aattatcatcacgtaatcataaccaacttt |
1990397 |
T |
|
| Q |
208 |
tgatcaataaagaatattcatattctctttctcaaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttccttc |
304 |
Q |
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| T |
1990398 |
tgatcaataaagaatattcatattctctttctcaaagatagcttaggtttctactatattgaacatcgattatttaacttgatactggtgttccttc |
1990494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 114 - 304
Target Start/End: Original strand, 2036020 - 2036189
Alignment:
| Q |
114 |
cagttattctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacctaatcataaccaacttttgatca |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||| |
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| T |
2036020 |
cagttattctcattgtaacgaactgaatcaaataagttagagggatttgatc------------aattaccatcacgtaatcataaccaacttttgatca |
2036107 |
T |
|
| Q |
214 |
ataaagaatattcatattctctttctcaaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttccttc |
304 |
Q |
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| T |
2036108 |
ataaagaatattcatattctctt---------tagcttaggtttctactatattgaacatcgattatttaactcgatactggtgttccttc |
2036189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 2035960 - 2036022
Alignment:
| Q |
8 |
ctccactttcattcat--tgttactcatgaaactatgttgtattgtagtatatatcaatacag |
68 |
Q |
| |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2035960 |
ctccactttcattcatggtgttactcatgaagctatgttgtattgtagtatatatcaatacag |
2036022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 2019266 - 2019313
Alignment:
| Q |
129 |
taactaactgaatcaaataagttagagggatttgacctttatagatac |
176 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||| |||| |||| |
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| T |
2019266 |
taactaactgaatcaaatcagttagagggatttgacctctataaatac |
2019313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 48204741 - 48204678
Alignment:
| Q |
241 |
aaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttccttc |
304 |
Q |
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| T |
48204741 |
aaagatagcttaggtttctactgtattgaacatcgattatttaactcgatactggtgttccttc |
48204678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 241 - 303
Target Start/End: Original strand, 2428286 - 2428348
Alignment:
| Q |
241 |
aaagatagcttaggtttctactgtattgaacaccgattatttaactcgatactggtgttcctt |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
2428286 |
aaagatagcttaggtttctactgtattgaacatcaattatttaactcgatactggtgttcctt |
2428348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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