View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_39 (Length: 310)
Name: NF1545_low_39
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 2 - 302
Target Start/End: Complemental strand, 48819205 - 48818905
Alignment:
| Q |
2 |
tctgtcctttgtacacttaataattttgaccaaagaaaattttacaaattctgctaattttacagtaatgtctgaggggaaatcatgcgagctaagcagg |
101 |
Q |
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| T |
48819205 |
tctgtcctttgtacccttaataattttgcccaaagaaaattttacaaattgtgctaattttacagtaatgtctgaggggaaatcatgcgagctaagcagg |
48819106 |
T |
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| Q |
102 |
attggaggtggttgcccggataaagtaaaatgcatgcaaacttgtcgtccatgttatattggcataggtcaagtcaactactattgtcgtcatgcagcta |
201 |
Q |
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| T |
48819105 |
attggaggtggttgcccggataaagtaaaatgcatgcaaacttgtcatccatgttatattggcataggtcaagtcaactactattgtcgtcatgccgcta |
48819006 |
T |
|
| Q |
202 |
gtccaatgttatacgaaacatgtgtttgtgaaatggtgaacggtgctccctgtcaagttcgtggatgtccggggaacacacctcctgctgctgcctttgc |
301 |
Q |
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| T |
48819005 |
gtccaatgttatacgaaacatgtgtttgtgaaatggtgaacggtgctccctgtcaagttcgtggatgtccggggaacacacctcctgctgctgcctttgc |
48818906 |
T |
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| Q |
302 |
t |
302 |
Q |
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| T |
48818905 |
t |
48818905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 55 - 289
Target Start/End: Complemental strand, 16004984 - 16004750
Alignment:
| Q |
55 |
ctaattttacagtaatgtctgaggggaaatcatgcgagctaagcaggattggaggtggttgcccggataaagtaaaatgcatgcaaacttgtcgtccatg |
154 |
Q |
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| T |
16004984 |
ctaattttacagtaatgtcggaggtgaaatcatgcgagctaactaggattggaggtggttgtccagatatatcaaaatgcatgaaaacttgtcttccatg |
16004885 |
T |
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| Q |
155 |
ttatattggcataggtcaagtcaactactattgtcgtcatgcagctagtccaatgttatacgaaacatgtgtttgtgaaatggtgaacggtgctccctgt |
254 |
Q |
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| T |
16004884 |
ttatgttggcataggtgaaatccactactattgtcgtcatcctggtggtccaatattatacgaaacatgtgtttgcgtaatggtgaaaggtgctccttgt |
16004785 |
T |
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| Q |
255 |
caagttcgtggatgtccggggaacacacctcctgc |
289 |
Q |
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| T |
16004784 |
caagtgcgcgggtgccctgggaacacacctcctgc |
16004750 |
T |
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