View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1545_low_4 (Length: 611)

Name: NF1545_low_4
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1545_low_4
NF1545_low_4
[»] chr3 (3 HSPs)
chr3 (10-286)||(40489184-40489460)
chr3 (295-489)||(40488453-40488646)
chr3 (441-582)||(40488313-40488453)
[»] chr7 (2 HSPs)
chr7 (297-458)||(36966793-36966942)
chr7 (293-424)||(2764675-2764804)
[»] chr4 (1 HSPs)
chr4 (218-378)||(55280327-55280479)
[»] chr2 (3 HSPs)
chr2 (295-458)||(17920599-17920755)
chr2 (267-411)||(35905635-35905771)
chr2 (73-148)||(35905856-35905931)
[»] chr6 (2 HSPs)
chr6 (73-148)||(2281547-2281622)
chr6 (361-455)||(2281442-2281530)
[»] chr1 (1 HSPs)
chr1 (423-459)||(14261452-14261488)
[»] chr5 (1 HSPs)
chr5 (73-148)||(18939868-18939944)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 4e-95; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 40489460 - 40489184
Alignment:
Q  10 catcatcatatatcaatcaaatcatgtgcataaataatatagttaaaaataaggaaatttgtcttgggatcagagtgtgcaatacggaataagcgaaagc 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40489460 catcatcatatatcaatcaaatcatgtgcataaataacatagttaaaaataaggaaatttgtcttgggatcagagtgtgcaatacggaataagcggaagc 40489361  T
Q  110 ttaggttatctctttttgtgaaacctgaacaatcaaattaatcctgcnnnnnnnnnnnnnnnnnnnntgagtaaaagtcataaatgagaacacaggaaat 209  Q
    || | ||||||||||||||||||| ||||||||||||||||||| ||                    |||||||||| |||||||||||||||||| |||    
T  40489360 ttggattatctctttttgtgaaacttgaacaatcaaattaatcccgcacaaccaacaacaacaacaatgagtaaaagccataaatgagaacacagggaat 40489261  T
Q  210 ttatcgtggaaaactcctctcaatatgagaaaataaaaaccattgggcctagttttaccaaaaacttccactatcac 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  40489260 ttatcgtggaaaactcctctcaatatgagaaaataaaaaccattggacctagttttgccaaaaacttccactatcac 40489184  T

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Target: chr3; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 295 - 489
Target Start/End: Complemental strand, 40488646 - 40488453
Alignment:
Q  295 taatggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaataaatatgatgattctaacaacgggtgagcaaacccta 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||    
T  40488646 taatggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaacaaatatgatgattataacaaccggtgagcaaacccta 40488547  T
Q  395 aataaatatccaaaacagacacaaagagaaagagaagacaaaactacttagaaaaattatctaaacaaagatagttcgcaaaatatacttttttc 489  Q
    || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  40488546 aa-aagtatccaaaacagacacaaagagaaagagaagacaaaactacttagaaaaattatctaaacaaagatagtttgccaaatatacttttttc 40488453  T

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Target: chr3; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 441 - 582
Target Start/End: Complemental strand, 40488453 - 40488313
Alignment:
Q  441 cttagaaaaattatctaaacaaagatagttcgcaaaatatacttttttcaccggtatccaaaatcttcttcctctttggcgtgctgctctctctcaaaat 540  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  40488453 cttagaaaaattatctaaacaaagatagtttgccaaatatacttttttcaccggtatccaaaatcttcttcctctgtggcgtgttgctctctctcaaaat 40488354  T
Q  541 tatcttactgtgcgcctcaatttttgctcacgcaccaatact 582  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  40488353 tatcttactgtgcgccacaattttt-ctcacgcaccaatact 40488313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 297 - 458
Target Start/End: Original strand, 36966793 - 36966942
Alignment:
Q  297 atggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaataaatatgatgattctaacaacgggtgagcaaaccctaaa 396  Q
    ||||||||||| ||||||||  ||||||| || ||||  ||||||||||| ||| ||||  || ||||||||||||||||||     | |||||||||||    
T  36966793 atggttacgattaatgtcttcttaaatctctaggaac--cgacaatcatcaaataatcaccaactatgatgattctaacaacc----aacaaaccctaaa 36966886  T
Q  397 taaatatccaaaacagacacaaagagaaagagaagacaaaactacttagaaaaattatctaa 458  Q
    || |||||| ||||||||||||||      ||||||||||||||||||||||||||||||||    
T  36966887 tagatatcccaaacagacacaaag------agaagacaaaactacttagaaaaattatctaa 36966942  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 293 - 424
Target Start/End: Original strand, 2764675 - 2764804
Alignment:
Q  293 aataatggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaataaatatgatgattctaacaacgggtgagcaaaccc 392  Q
    |||||||||||| ||||| ||||| |||||||| || ||||  ||||| ||||| ||| ||||  || |||| |||||||||||||  | |||||||| |    
T  2764675 aataatggttacaatcaacgtcttcctaaatctctaggaac--cgacagtcatcaaataatcaccaattatggtgattctaacaaccagagagcaaactc 2764772  T
Q  393 taaataaatatccaaaacagacacaaagagaa 424  Q
    ||||||  ||| | ||||||||||||||||||    
T  2764773 taaataggtataccaaacagacacaaagagaa 2764804  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 378
Target Start/End: Complemental strand, 55280479 - 55280327
Alignment:
Q  218 gaaaactcctctcaatatgagaaaataaaaaccattgggcctagttttaccaaaaacttccactatcacaatgtcaataatggttacgatcaatgtcttt 317  Q
    |||||||||||||||| ||||| ||||||||||||  | ||||||    |||||||||||||||| ||||||      ||||||||| |||||||||||     
T  55280479 gaaaactcctctcaatgtgagagaataaaaaccatgagacctagtccagccaaaaacttccactaccacaat------aatggttacaatcaatgtcttc 55280386  T
Q  318 ctaaatctttaagaactgcgacaatcatcgaattatcaataaatatgatgattctaacaac 378  Q
     ||||||| || |||||  |||||||||| ||| ||||  || |||| |||||||||||||    
T  55280385 ataaatctctaggaact--gacaatcatcaaataatcaccaactatggtgattctaacaac 55280327  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 295 - 458
Target Start/End: Original strand, 17920599 - 17920755
Alignment:
Q  295 taatggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaataaa-tatgatgattctaacaacgggtgagcaaaccct 393  Q
    |||||||||| |||||||||||  ||||||| || |||||   ||||||||| ||| ||||   || ||||||||||||||||||  | |||||||| ||    
T  17920599 taatggttacaatcaatgtcttcataaatctctaggaacta--acaatcatcaaataatcatccaactatgatgattctaacaactagagagcaaactct 17920696  T
Q  394 aaataaatatccaaaacagacacaaagagaaagagaagacaaaactacttagaaaaattatctaa 458  Q
    ||||| |||||| ||||| ||||      ||| | ||||||||||||||||||||||||||||||    
T  17920697 aaatagatatcccaaacaaacac------aaacaaaagacaaaactacttagaaaaattatctaa 17920755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 267 - 411
Target Start/End: Complemental strand, 35905771 - 35905635
Alignment:
Q  267 ccaaaaacttccactatcacaatgtcaataatggttacgatcaatgtctttctaaatctttaagaactgcgacaatcatcgaattatcaataaatatgat 366  Q
    |||||||||||||||||||||||      ||||||||| ||||||||||| |||||||| ||  |||||  | ||||||| ||| ||||  || |||| |    
T  35905771 ccaaaaacttccactatcacaat------aatggttacaatcaatgtcttcctaaatctctagaaactg--aaaatcatcaaataatcaccaactatggt 35905680  T
Q  367 gattctaacaacgggtgagcaaaccctaaataaatatccaaaaca 411  Q
    ||||||||||||  | |||||||||||||||| |||||| |||||    
T  35905679 gattctaacaaccagagagcaaaccctaaatagatatcccaaaca 35905635  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 35905931 - 35905856
Alignment:
Q  73 ttgggatcagagtgtgcaatacggaataagcgaaagcttaggttatctctttttgtgaaacctgaacaatcaaatt 148  Q
    |||| ||||||||| |||   ||||||| ||| |||||||  ||||||||||||||| ||||||||||||| ||||    
T  35905931 ttggaatcagagtgcgcagagcggaatatgcggaagcttaaattatctctttttgtggaacctgaacaatccaatt 35905856  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 2281622 - 2281547
Alignment:
Q  73 ttgggatcagagtgtgcaatacggaataagcgaaagcttaggttatctctttttgtgaaacctgaacaatcaaatt 148  Q
    |||||||||| ||| |||| |||||||  ||| |||||||  ||||||||||||||| ||||||||||||| ||||    
T  2281622 ttgggatcagtgtgcgcaaaacggaatctgcggaagcttaaattatctctttttgtggaacctgaacaatccaatt 2281547  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 455
Target Start/End: Complemental strand, 2281530 - 2281442
Alignment:
Q  361 tatgatgattctaacaacgggtgagcaaaccctaaataaatatccaaaacagacacaaagagaaagagaagacaaaactacttagaaaaattatc 455  Q
    |||||||||||||||| |  | ||||||||||||||||  ||||  |||||||||||      |||| ||||| |||||||||||||||||||||    
T  2281530 tatgatgattctaacagccagagagcaaaccctaaataggtatctgaaacagacaca------aagaaaagaccaaactacttagaaaaattatc 2281442  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 423 - 459
Target Start/End: Original strand, 14261452 - 14261488
Alignment:
Q  423 aaagagaagacaaaactacttagaaaaattatctaaa 459  Q
    |||||||||||||||||||||||| ||||||||||||    
T  14261452 aaagagaagacaaaactacttagataaattatctaaa 14261488  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 18939944 - 18939868
Alignment:
Q  73 ttgggatcagagtgtgcaatacggaataagcgaaagcttaggttatctcttt-ttgtgaaacctgaacaatcaaatt 148  Q
    ||||||||||||||||||||||  |||| ||  |||||||  |||||| ||| ||||| || |||||||||||||||    
T  18939944 ttgggatcagagtgtgcaatacaaaatatgcagaagcttaaattatctttttcttgtggaatctgaacaatcaaatt 18939868  T

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