View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_44 (Length: 297)
Name: NF1545_low_44
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 30888401 - 30888136
Alignment:
| Q |
16 |
cacagaagaattaagatggttaagacaatgatacgagaatgaagagaaatagtagtccattttgtatgataaaaagaagaaataatgtgcacaacttcta |
115 |
Q |
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| T |
30888401 |
cacagaagaattaagatggttaagacaatgatacgagaatgaagagaaatagtagtccattttgtatgataaaaagaagaaataatgtgcacaacttcta |
30888302 |
T |
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| Q |
116 |
caaaaattttaaaaccattttgtttgagnnnnnnnnatcactattgttattccatctatctnnnnnnnntataaataataaaactgtggtgatttgataa |
215 |
Q |
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| T |
30888301 |
caaaagttttaaaaccattttgtttgagttttttttatcactattgttatttcatctatctaaaaaaaatataaataataaaactatggtgatttgataa |
30888202 |
T |
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| Q |
216 |
attcaattgttgtttatcgtgaattttggtaattcattgtgattttgtaaaactcatcgtgcatcc |
281 |
Q |
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| T |
30888201 |
atttaattgttgtttatcgtgaattttgatagttcattgtgattttgtaaaactcatcgtgcatcc |
30888136 |
T |
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