View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_45 (Length: 292)
Name: NF1545_low_45
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 2021505 - 2021764
Alignment:
| Q |
18 |
ggaagaaattattatctgaaaaactgattatctttttaccgctaatcttgtttagtgtttgtgccattgtctgtacatttctgtcacttgcattatctaa |
117 |
Q |
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| T |
2021505 |
ggaagaaattattatctgaaaaactgattatctatttaccgctaatcttgtttagtgtttgtgccattgtctgtacatttctgtcacttgcattatctaa |
2021604 |
T |
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| Q |
118 |
atttgaaataattgatttttctctgtagaatggacacggtaagaaaacgttgtcctgtttctagttatgagggattaattgaacttcagaggattgttca |
217 |
Q |
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| T |
2021605 |
atttgaaataattgatttttctctgtagaatggacacgttaagaaaacgtcttcctgtttctagttatgagggattaattgaacttcagaagattgctca |
2021704 |
T |
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| Q |
218 |
aaggtttgaagataagacttacacttctgcgacaagcaaggtacattcattacgagtatt |
277 |
Q |
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| T |
2021705 |
aaggtttgaagataagatttacacttctgcgacaagcaaggtacattcattacgagtatt |
2021764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 1989947 - 1990202
Alignment:
| Q |
18 |
ggaagaaattattatctgaaaaactgattatctttttaccgctaatcttgtttagtgtttgtgccattgtctgtacatttctgtcacttgcattatctaa |
117 |
Q |
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| T |
1989947 |
ggaataaataattatctgacaaa--gattatctttttaccgctaatcttgtt--gtgtttgtgccattgtctgaacatctctgtcacttgcactatctaa |
1990042 |
T |
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| Q |
118 |
atttgaaataattgatttttctctgtagaatggacacggtaagaaaacgttgtcctgtttctagttatgagggattaattgaacttcagaggattgttca |
217 |
Q |
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| T |
1990043 |
atttgaagtaattgcttttcctttgtagaatggacacgttaagaaaatatcatcctatttctggttctgagggattacttgaacttcggaagcttgctca |
1990142 |
T |
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| Q |
218 |
aaggtttgaagataagacttacacttctgcgacaagcaaggtacattcattacgagtatt |
277 |
Q |
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| T |
1990143 |
aaggtttgaagataagatctatactgatgcggcaagccaggtacattcattacgagtatt |
1990202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 97 - 277
Target Start/End: Original strand, 2035773 - 2035952
Alignment:
| Q |
97 |
tctgtcacttgcattatctaaatttgaaataattgatttttctctgtagaatggacacggtaagaaaacgttgtcctgtttctagttatgagggattaat |
196 |
Q |
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| T |
2035773 |
tctgtcacttgcactatctaa-tttgaaataattgcttttcctttgtagaatggacacattaagaaaacatcttcccgtttctggttctgagggattgct |
2035871 |
T |
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| Q |
197 |
tgaacttcagaggattgttcaaaggtttgaagataagacttacacttctgcgacaagcaaggtacattcattacgagtatt |
277 |
Q |
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| T |
2035872 |
tgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggtacattcattacgagtatt |
2035952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 87 - 277
Target Start/End: Original strand, 2018942 - 2019132
Alignment:
| Q |
87 |
tctgtacatttctgtcacttgcattatctaaatttgaaataattgatttttctctgtagaatggacacggtaagaaaacgttgtcctgtttctagttatg |
186 |
Q |
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|||| |||| ||||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||| || | |||||||||| ||| | |
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| T |
2018942 |
tctgaacatctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccg |
2019041 |
T |
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| Q |
187 |
agggattaattgaacttcagaggattgttcaaaggtttgaagataagacttacacttctgcgacaagcaaggtacattcattacgagtatt |
277 |
Q |
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| T |
2019042 |
agggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattaccagtatt |
2019132 |
T |
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