View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1545_low_46 (Length: 282)
Name: NF1545_low_46
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_46 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 40230456 - 40230689
Alignment:
| Q |
13 |
aatatacgggttaataaacaaaatgcaaaacatagacaaaattgagtatatgggtcacataaaaaattgagtatacgagtgacacgttttatataccttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40230456 |
aatatacgggttaataaacaaaatgcaaaacatagacaaaattgagtatatgggtcacataaaaaattgagtatacgagtgacacgttttatataccttt |
40230555 |
T |
|
| Q |
113 |
catctaattgaataatcaaattattgtcgattgcgaaattaagatgatcaattattctaaaagatcaatcagaccgacatatgagttaataatcagacaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
40230556 |
catctaattgaataatcaaattattgtcgattgcgaaattaagatgatcaattattctaaaagatcagtcagagcgacatataagttaataatcagacaa |
40230655 |
T |
|
| Q |
213 |
tcataaaacattgacaatgtatcttaactcacaa |
246 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
40230656 |
tcataaaacattgagaatgtatcttaactcacaa |
40230689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University