View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_48 (Length: 278)
Name: NF1545_low_48
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_48 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 278
Target Start/End: Complemental strand, 13482634 - 13482362
Alignment:
| Q |
6 |
gtccaagaatatcccttcacagatcccaatattatactagtgagtaagtagtgaaaaacagtaaaattatcacctatatgcaatagagatactaaactgc |
105 |
Q |
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| T |
13482634 |
gtccaaaaatatcccttcacagatcccaattttatactagtgagtaagtagtgaaaaacagtaaaattatcacctatatgcaatagagatactaaactgc |
13482535 |
T |
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| Q |
106 |
acttaatagtcaaaataataataattgaacaaaattctaaattagttactctcaaatcttaatatattacagcaaaatgcagccgtaattgcagttacac |
205 |
Q |
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| T |
13482534 |
acttaatagtcaaagtaataataattgaacaaaattctaaattagttactctcaaatcttaatatattacagcaaaatgcagccgtaattgcagttacac |
13482435 |
T |
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| Q |
206 |
acctcaattaaaatatataattatgaataattttaataaaatagtagcaagattctgaattgtaaattaaaat |
278 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13482434 |
acctcaattaaaatatataattatgaatagttttaataaaatagtagcaagattctgaattgtaaattaaaat |
13482362 |
T |
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