View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_50 (Length: 265)
Name: NF1545_low_50
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 36149377 - 36149628
Alignment:
| Q |
1 |
ttgtccttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtg |
100 |
Q |
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| T |
36149377 |
ttgtccttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccattgtg |
36149476 |
T |
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| Q |
101 |
tgtggaattacttcgacaccatgcagtggtggcggcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgtt |
200 |
Q |
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| T |
36149477 |
tgtggaattacttcgacaccatgcagtggtggcggcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgtt |
36149576 |
T |
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| Q |
201 |
cttcttctttgtcatctattttgagtgcatatgtgtaattgacaagttcttc |
252 |
Q |
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| T |
36149577 |
cttcttctttgtcatctattttgagtgcacatgtgtaattgacaagtgcttc |
36149628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 36083446 - 36083533
Alignment:
| Q |
150 |
gagaatcattttccatcatgggaacttcttcttgt---tgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
234 |
Q |
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| T |
36083446 |
gagaatcactttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgt |
36083533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 234
Target Start/End: Original strand, 36149636 - 36149799
Alignment:
| Q |
74 |
tctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcggcggtg------aaggaggcggagaatcattttccatca |
167 |
Q |
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| T |
36149636 |
tctttgtgaatttgagcttccatgatgtgtggaatcacttccacttcttgcagctgtggcggtggtggtggtgaaggaggcggagaatcactttccttca |
36149735 |
T |
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| Q |
168 |
tgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
234 |
Q |
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| T |
36149736 |
tttgcacttctttttctagcttgggagag---tcttcttctttctcatctattttgagtgcacatgt |
36149799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 36149759 - 36149822
Alignment:
| Q |
14 |
ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
77 |
Q |
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| T |
36149759 |
ggagagtcttcttctttctcatctattttgagtgcacatgtttggaggagaagtgcttcttctt |
36149822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 26527617 - 26527381
Alignment:
| Q |
1 |
ttgtccttgattaggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtg |
100 |
Q |
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| T |
26527617 |
ttgtccttgcttaggagactgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacatgagcttccatggtg |
26527518 |
T |
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| Q |
101 |
tgtggaattacttcgacaccatgcagtggtggcg------gcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggag |
194 |
Q |
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| T |
26527517 |
tggggaatcacttccacttcatacagcagtggcggtggtagtggtgaaggaggcggaaaatcactttcattcatgtgcacttctttttctagcttgggag |
26527418 |
T |
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| Q |
195 |
agtgttcttcttctttgtcatctattttgagtgcatatgt |
234 |
Q |
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| T |
26527417 |
agtg---ttcttctatctcatctattttgagtgcacatgt |
26527381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 26527421 - 26527358
Alignment:
| Q |
14 |
ggagagtgttcttctttgtcgtctattttcagtgcgcatgtttggatgatgagtgcttcttctt |
77 |
Q |
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||||||||||||||| | || |||||||| ||||| |||||||||| || ||||||||||||| |
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| T |
26527421 |
ggagagtgttcttctatctcatctattttgagtgcacatgtttggaggagaagtgcttcttctt |
26527358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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