View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1545_low_52 (Length: 260)

Name: NF1545_low_52
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1545_low_52
NF1545_low_52
[»] chr2 (9 HSPs)
chr2 (58-260)||(26650839-26651042)
chr2 (56-257)||(18929235-18929435)
chr2 (64-260)||(17402729-17402925)
chr2 (77-257)||(25520421-25520601)
chr2 (108-241)||(31404071-31404205)
chr2 (108-232)||(24543870-24543994)
chr2 (124-260)||(20478262-20478396)
chr2 (160-227)||(28760655-28760724)
chr2 (220-260)||(19878972-19879012)
[»] chr8 (16 HSPs)
chr8 (58-260)||(28371034-28371236)
chr8 (63-260)||(9218079-9218278)
chr8 (61-187)||(10660970-10661095)
chr8 (108-260)||(9286347-9286498)
chr8 (149-257)||(23540243-23540351)
chr8 (146-241)||(16600591-16600686)
chr8 (119-260)||(13110204-13110344)
chr8 (119-259)||(18672125-18672261)
chr8 (124-258)||(25095053-25095187)
chr8 (149-196)||(26136195-26136242)
chr8 (124-214)||(22713661-22713751)
chr8 (180-260)||(10661748-10661829)
chr8 (216-257)||(24577367-24577408)
chr8 (124-166)||(9006931-9006973)
chr8 (123-179)||(24680835-24680890)
chr8 (124-223)||(27123637-27123736)
[»] chr7 (13 HSPs)
chr7 (58-260)||(20145813-20146014)
chr7 (64-260)||(17600539-17600733)
chr7 (60-260)||(2546914-2547110)
chr7 (76-260)||(14987093-14987278)
chr7 (76-260)||(15416704-15416889)
chr7 (58-260)||(3743380-3743587)
chr7 (105-260)||(4173459-4173615)
chr7 (98-260)||(24832402-24832570)
chr7 (181-260)||(10649240-10649318)
chr7 (182-241)||(5531725-5531784)
chr7 (124-241)||(18046386-18046501)
chr7 (124-169)||(14961170-14961215)
chr7 (124-169)||(15390642-15390687)
[»] chr6 (12 HSPs)
chr6 (58-260)||(22397575-22397777)
chr6 (67-260)||(17524797-17524991)
chr6 (149-258)||(1177236-1177349)
chr6 (149-260)||(16177304-16177415)
chr6 (124-241)||(17947890-17948007)
chr6 (108-241)||(18713709-18713842)
chr6 (108-260)||(14762939-14763090)
chr6 (153-260)||(15830026-15830133)
chr6 (98-192)||(31126249-31126351)
chr6 (124-166)||(25945847-25945889)
chr6 (110-211)||(28712360-28712461)
chr6 (160-211)||(13002854-13002906)
[»] chr5 (15 HSPs)
chr5 (84-260)||(19218002-19218177)
chr5 (98-257)||(20060802-20060968)
chr5 (98-257)||(20058658-20058824)
chr5 (98-260)||(20064484-20064653)
chr5 (149-260)||(23210129-23210240)
chr5 (149-260)||(20713228-20713339)
chr5 (124-214)||(19924022-19924112)
chr5 (124-225)||(17167316-17167417)
chr5 (108-241)||(24878356-24878489)
chr5 (180-260)||(23379394-23379474)
chr5 (168-260)||(25951334-25951425)
chr5 (124-214)||(19926749-19926839)
chr5 (124-260)||(17987482-17987617)
chr5 (60-91)||(24878288-24878319)
chr5 (104-136)||(25951260-25951292)
[»] chr3 (16 HSPs)
chr3 (65-260)||(24699082-24699275)
chr3 (64-260)||(26010836-26011034)
chr3 (58-260)||(15686859-15687062)
chr3 (77-260)||(13428733-13428914)
chr3 (85-256)||(4769742-4769913)
chr3 (60-260)||(4765710-4765916)
chr3 (58-259)||(4832538-4832740)
chr3 (114-256)||(23378488-23378631)
chr3 (149-249)||(7148790-7148890)
chr3 (149-239)||(16242979-16243069)
chr3 (152-260)||(29614615-29614724)
chr3 (141-260)||(9033501-9033622)
chr3 (118-241)||(27304424-27304547)
chr3 (124-166)||(13409834-13409876)
chr3 (118-192)||(8737234-8737308)
chr3 (118-192)||(9089472-9089546)
[»] chr4 (6 HSPs)
chr4 (58-253)||(11361595-11361790)
chr4 (65-260)||(9409174-9409370)
chr4 (108-239)||(16675086-16675218)
chr4 (149-211)||(5358040-5358102)
chr4 (124-166)||(18558473-18558515)
chr4 (191-256)||(8140832-8140896)
[»] chr1 (11 HSPs)
chr1 (84-257)||(11013853-11014027)
chr1 (114-260)||(33103021-33103167)
chr1 (103-260)||(20146169-20146332)
chr1 (108-238)||(22607874-22608003)
chr1 (152-260)||(13202085-13202192)
chr1 (108-260)||(36571676-36571826)
chr1 (127-256)||(20150459-20150588)
chr1 (124-241)||(17615274-17615391)
chr1 (151-241)||(22620063-22620153)
chr1 (108-180)||(20866221-20866293)
chr1 (130-166)||(20886571-20886607)
[»] scaffold0264 (1 HSPs)
scaffold0264 (58-260)||(20793-20993)
[»] scaffold0555 (1 HSPs)
scaffold0555 (103-260)||(5687-5851)
[»] scaffold0337 (2 HSPs)
scaffold0337 (108-223)||(17221-17336)
scaffold0337 (108-223)||(4546-4661)
[»] scaffold0016 (1 HSPs)
scaffold0016 (180-260)||(12991-13071)
[»] scaffold0002 (1 HSPs)
scaffold0002 (128-260)||(374145-374275)
[»] scaffold0142 (1 HSPs)
scaffold0142 (139-238)||(20572-20671)
[»] scaffold1102 (1 HSPs)
scaffold1102 (156-241)||(910-996)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 58 - 260
Target Start/End: Original strand, 26650839 - 26651042
Alignment:
Q  58 tgtggcgtctttcgacagaaaaaagg-ttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaa 156  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||     
T  26650839 tgtggcttctttcgacagaaaaaagggttttaaaagcaaagtaaagacatgaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatggattat 26650938  T
Q  157 aaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttg 256  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||| |||||||||||| |||||||||||||||    
T  26650939 aaataaaggtggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtgcttcgagtgttttagaattctgtataggtgatttg 26651038  T
Q  257 cgac 260  Q
    ||||    
T  26651039 cgac 26651042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 18929235 - 18929435
Alignment:
Q  56 cctgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcatta 155  Q
    |||||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18929235 cctgtggcgtatttcgacataaaa-aggttttaaaagcaaagtaaaggcattaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatgcatta 18929333  T
Q  156 aaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgattt 255  Q
    ||||||||||| |||||| ||||| |||||||||||||||||| ||| | ||||||| | |||||||||||| |||||||||||| | ||||||||||||    
T  18929334 aaaataaaggtggttcgataaatcttttacatacattctttatgactatcttctctcacgccggtacttcgagtgttttagaattctatataggtgattt 18929433  T
Q  256 gc 257  Q
    ||    
T  18929434 gc 18929435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 64 - 260
Target Start/End: Original strand, 17402729 - 17402925
Alignment:
Q  64 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaa 163  Q
    ||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  17402729 gtctttcaacaaaaaaaaggttttaaaagcaaagtaaaggcaataagtttaaattgcagaaacttaaaggaaatataaaatacaatgcattaaaaataaa 17402828  T
Q  164 ggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||| |||  |||||||||||||||||||||||||| ||| ||||||||||  ||||||||| || |||||||||||| | |||||||||||||||||    
T  17402829 ggtggttatacaaatcctttacatacattctttataacttttttctctcgtgccggtacttagagtgttttagaattctatataggtgatttgcgac 17402925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 77 - 257
Target Start/End: Complemental strand, 25520601 - 25520421
Alignment:
Q  77 aaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaa 176  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| || |||||| |||| |||| |||| |||||||||||||||||  |||||||||    
T  25520601 aaaaaggttttaaaagcaaagtaaaggcattaagttaaaattgcagaaagttaaagaaaagataaactacattgcattaaaaataaaggaggttcgacaa 25520502  T
Q  177 atcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 257  Q
    | |||||||||||||| | ||| ||||||||||||||| |||  ||||||| ||||||| |||| ||||||||||||||||    
T  25520501 aacctttacatacattatgtatgactcttttctctcgcgccgtcacttcgagtgttttataattctgtataggtgatttgc 25520421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 31404205 - 31404071
Alignment:
Q  108 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttt 206  Q
    ||||||||| ||||| ||||||||| ||||||||| | || ||||||||||  |||||| |||||||||||| ||| ||||||||||| ||| |||||||    
T  31404205 aagtttaaaatgcagaaacttaaagaaaaggtaaattgcattgcattaaaataaaaggtggttcgacaaatcattttacatacattctgtataactcttt 31404106  T
Q  207 tctctcgctccggtacttcgaatgttttagaattt 241  Q
    |||||||| |||||||||||| |||||||||||||    
T  31404105 tctctcgcgccggtacttcgagtgttttagaattt 31404071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 24543870 - 24543994
Alignment:
Q  108 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 207  Q
    ||||| ||||||||  |||||  ||||||  |||| | || |||||||||||||||||| |||| | |||||||||||||| ||| | ||| | ||||||    
T  24543870 aagttaaaattgcaaaaacttgtaggaaaaataaattgcattgcattaaaaataaaggtggttccagaaatcctttacatatattatgtataaatctttt 24543969  T
Q  208 ctctcgctccggtacttcgaatgtt 232  Q
    ||||||| ||| |||||||| ||||    
T  24543970 ctctcgcgccgatacttcgagtgtt 24543994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 260
Target Start/End: Complemental strand, 20478396 - 20478262
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcc-tttacatacattctttatcactcttttctctcgctccggtac 222  Q
    |||||||||||||    |||| |||| |||||||| ||||||| || | |||||||  |||||||||||||| ||| |||| |||| ||||| ||||||     
T  20478396 aacttaaaggaaaacataaatgcaattcattaaaattaaaggtggt-ctacaaatcagtttacatacattctgtataactcgtttccctcgcgccggtag 20478298  T
Q  223 ttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    || || |||| ||||||| ||||||  |||||||||||    
T  20478297 tttgagtgttgtagaattatgtata--tgatttgcgac 20478262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 28760724 - 28760655
Alignment:
Q  160 taaaggtagttcgacaaatcc-tttacatacattctttatcactcttttctctcg-ctccggtacttcga 227  Q
    ||||||| ||||||||||||  |||||||||||||| ||| |||||||||||| | | ||||||||||||    
T  28760724 taaaggtggttcgacaaatcagtttacatacattctatatgactcttttctctagacgccggtacttcga 28760655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 19878972 - 19879012
Alignment:
Q  220 tacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    |||||| | |||||||||||| |||||||||||||||||||    
T  19878972 tacttctagtgttttagaattctgtataggtgatttgcgac 19879012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 260
Target Start/End: Original strand, 28371034 - 28371236
Alignment:
Q  58 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 157  Q
    ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  28371034 tgtggcgtctttcgacagaaaaatggttttaaaagcaaagtaaatgcattaagtttaaattgcagaaacttaaaggaacagtaaaatacaatgcattaaa 28371133  T
Q  158 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 257  Q
    ||||||||  ||||||||||| ||||||||||||||||||| ||| ||||| ||| | | |||||||||| |||||||||||||| ||||||||||||||    
T  28371134 aataaaggaggttcgacaaatactttacatacattctttatgacttttttcactcacactggtacttcgagtgttttagaattttatataggtgatttgc 28371233  T
Q  258 gac 260  Q
    |||    
T  28371234 gac 28371236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 63 - 260
Target Start/End: Original strand, 9218079 - 9218278
Alignment:
Q  63 cgtctttcgacagaaaaaa----ggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaa 158  Q
    |||||||||||||||||||    | ||||||||||||||| ||  ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  9218079 cgtctttcgacagaaaaaaaaaggtttttaaaagcaaagtaaaaacattaagtttaaattgcagaaacttaaaggaaagataaaatacaatgcattaaaa 9218178  T
Q  159 ataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcg 258  Q
    |||||| | |||||||||||| |||||||||||||| ||| |  ||||||||||||  ||||||||||| |||||||||||| |||||| ||||||||||    
T  9218179 ataaagatggttcgacaaatcatttacatacattctgtatga--cttttctctcgcgtcggtacttcgagtgttttagaattctgtatatgtgatttgcg 9218276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 61 - 187
Target Start/End: Original strand, 10660970 - 10661095
Alignment:
Q  61 ggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaat 160  Q
    ||||||||| |||||||||  ||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |||  ||||||||| |||||    
T  10660970 ggcgtctttggacagaaaag-ggttttaaaagcaaagtaaagacattaagtttaaattgcaggaagttaaaggaaaggtgaaacgcaatgcattcaaaat 10661068  T
Q  161 aaaggtagttcgacaaatcctttacat 187  Q
    |||||| ||||||||||||||||||||    
T  10661069 aaaggtggttcgacaaatcctttacat 10661095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 9286498 - 9286347
Alignment:
Q  108 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 207  Q
    ||||| ||| ||||| ||||||||  |||| |||| | || |||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||    
T  9286498 aagttaaaagtgcagaaacttaaaaaaaagataaattgcattgcattaaaaataaaggtagttcgacaaatcctttacatacattttgtataactatttt 9286399  T
Q  208 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||||||| |||||||||||| |||| ||||| ||| |||| ||||||||||||    
T  9286398 ctctcgcaccggtacttcgagtgttgtagaa-tttctatatgtgatttgcgac 9286347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 23540351 - 23540243
Alignment:
Q  149 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 248  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||||||| | |||||||||| |  ||||||||| || | |||||||||| |||||||    
T  23540351 tgcattaaaaataaaggtggttcgaaaaatcttttacatacattctttatgattcttttctcttgagccggtactttgagtattttagaattctgtatag 23540252  T
Q  249 gtgatttgc 257  Q
    |||||||||    
T  23540251 gtgatttgc 23540243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 16600591 - 16600686
Alignment:
Q  146 caatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattt 241  Q
    |||||||||||||||||| || |||||||||||||||||| |||||| | ||| ||||| ||||||||| |||||||||||| |||| ||||||||    
T  16600591 caatgcattaaaaataaatgtggttcgacaaatcctttacgtacattatgtataactctattctctcgcgccggtacttcgagtgttgtagaattt 16600686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 260
Target Start/End: Original strand, 13110204 - 13110344
Alignment:
Q  119 gcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccg 218  Q
    |||| ||||||||| |||| |||| | || |||||||||||||||||| |||| ||||||| | |||||| ||| | ||| ||||||||||||| | |||    
T  13110204 gcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcaacaaatcatatacatatattttgtataactcttttctctctcgccg 13110303  T
Q  219 gtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||||||||| |||| ||||| ||| |||| ||||||||||||    
T  13110304 gtacttcgagtgttgtagaa-tttctataagtgatttgcgac 13110344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 259
Target Start/End: Complemental strand, 18672261 - 18672125
Alignment:
Q  119 gcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccg 218  Q
    |||| ||||| ||| |||| |||| |||| ||||||||||||||||||   || ||||||| |||||||||||| | ||| ||||||||||||| | ||     
T  18672261 gcagaaacttcaagaaaagataaattacattgcattaaaaataaaggt---tcaacaaatcatttacatacattttgtataactcttttctctctcgcca 18672165  T
Q  219 gtacttcgaatgttttagaattttgtataggtgatttgcga 259  Q
    ||||||||| |||| ||||| ||| |||| |||||||||||    
T  18672164 gtacttcgagtgttgtagaa-tttctataagtgatttgcga 18672125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 258
Target Start/End: Original strand, 25095053 - 25095187
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttttctctcgctccggtac 222  Q
    ||||||||| |||| |||| | || |||||| | ||||||||| |||||||||||  ||| ||||||||  | ||| |||||||| |||||| |||||||    
T  25095053 aacttaaagaaaagataaattgcattgcatttataataaaggtggttcgacaaataattttacatacatcatgtataactcttttatctcgcgccggtac 25095152  T
Q  223 ttcgaatgttttagaattttgtataggtgatttgcg 258  Q
    ||||  |||||||||| ||| |||| ||||||||||    
T  25095153 ttcgggtgttttagaa-tttctataagtgatttgcg 25095187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 26136242 - 26136195
Alignment:
Q  149 tgcattaaaaataaaggtagttcgacaaatcctttacatacattcttt 196  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||    
T  26136242 tgcattaaaaataaaggtggtccgacaaatcctttacatacattcttt 26136195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 22713751 - 22713661
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgc 214  Q
    ||||||||| |||| |||  |||| |||||||||||||||||| ||| ||||||| ||||||||| ||||| ||| | |||||||| ||||    
T  22713751 aacttaaagaaaagataatttacattgcattaaaaataaaggtggtttgacaaattctttacatatattctatataaatcttttctatcgc 22713661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 10661748 - 10661829
Alignment:
Q  180 ctttacatacattctttatcactcttttctctcgctccggtacttcga-atgttttagaattttgtataggtgatttgcgac 260  Q
    ||||||||||||||||||| |||||||| | |||| ||||||| | || |  |||||||||| |||||||||||||||||||    
T  10661748 ctttacatacattctttatgactcttttttatcgcaccggtacattgagagtttttagaattctgtataggtgatttgcgac 10661829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 24577408 - 24577367
Alignment:
Q  216 ccggtacttcgaatgttttagaattttgtataggtgatttgc 257  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  24577408 ccggtacttcgattgttttagaattctgtataggtgatttgc 24577367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 9006931 - 9006973
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 166  Q
    |||||||||||||||||||||  | ||||||||||||||||||    
T  9006931 aacttaaaggaaaggtaaaatgtattgcattaaaaataaaggt 9006973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 24680890 - 24680835
Alignment:
Q  123 gaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatc 179  Q
    |||||||||| ||||||||| |||| |||||||||| |||| || ||||||||||||    
T  24680890 gaacttaaagaaaaggtaaattacattgcattaaaa-taaatgtggttcgacaaatc 24680835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 27123736 - 27123637
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcct-ttacatacattctttatcactcttttctctcgctccggtac 222  Q
    |||||||||||| | |||| | || |||||||||| ||||||| |||||| |||||   ||||||||||| | ||| |||||||||||||||  ||||||    
T  27123736 aacttaaaggaatgataaattgcattgcattaaaa-taaaggtggttcgataaatcagattacatacattatgtataactcttttctctcgcatcggtac 27123638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 260
Target Start/End: Original strand, 20145813 - 20146014
Alignment:
Q  58 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 157  Q
    |||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  20145813 tgtggcgtctttcgacagaaaa-aggttttaaaagcaaagtaaatgcattaactttaaattgcagaaacttcaaggaaaggtagaatacaatgcattaaa 20145911  T
Q  158 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 257  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| || ||||||||| |||||||||||| || || ||||||||||    
T  20145912 aataaaggtggttcgacaaatcctttacatacattctttatgactctcttctctcgcgccagtacttcgagtgttttagaattatgcatgggtgatttgc 20146011  T
Q  258 gac 260  Q
    |||    
T  20146012 gac 20146014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 64 - 260
Target Start/End: Original strand, 17600539 - 17600733
Alignment:
Q  64 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaa 163  Q
    ||||||||||| ||||||||||||||||| ||||| |||| |  | ||||||||| ||  |||||||||||||| ||| |||||| ||||||||||||||    
T  17600539 gtctttcgacaaaaaaaaggttttaaaagaaaagtaaaggaa--aggtttaaattccataaacttaaaggaaagataacatacaaagcattaaaaataaa 17600636  T
Q  164 ggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||| ||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||| |||||||||||| |||||||||||||||||||    
T  17600637 ggttgttcgacaaatcctttacatacattctttatgactctttcctctcgtgccggtacttcgagtgttttagaattctgtataggtgatttgcgac 17600733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 60 - 260
Target Start/End: Original strand, 2546914 - 2547110
Alignment:
Q  60 tggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaa 159  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||     ||||    
T  2546914 tggcgtctttcgacggaaaaaaggttttaaaagcaaagaaaaggcattaagtttaaattgcagaaacttaaaggaaaggtaaaatacaatg----taaaa 2547009  T
Q  160 taaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcga 259  Q
    ||||||| ||  | |||||||||||||| |||||||||| ||| ||||||||||   ||||||||||| |||||||||||| | ||||||||||||||||    
T  2547010 taaaggtggtctgccaaatcctttacatccattctttatgacttttttctctcgggtcggtacttcgagtgttttagaattctatataggtgatttgcga 2547109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 76 - 260
Target Start/End: Complemental strand, 14987278 - 14987093
Alignment:
Q  76 aaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaa-tacaatgcattaaaaataaaggtagttcgac 174  Q
    |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||| |||| ||||| ||||   |||||||||||||||| ||||||     
T  14987278 aaaaaagggtttaaaagaaaagtaaaggcattaagtttaaattggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaa 14987179  T
Q  175 aaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||||| |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||    
T  14987178 aaatcttttacatacattctttatgactcttttctctcgcaccggtacttcgagtgttttagaattatgtataggtgatatgcgac 14987093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 76 - 260
Target Start/End: Complemental strand, 15416889 - 15416704
Alignment:
Q  76 aaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaa-tacaatgcattaaaaataaaggtagttcgac 174  Q
    |||||||| |||||||| ||||| |||||||||||||||||||| || ||||||||| |||| ||||| ||||   |||||||||||||||| ||||||     
T  15416889 aaaaaagggtttaaaagaaaagtaaaggcattaagtttaaattggagaaacttaaagaaaagataaaaatacatctcattaaaaataaaggtggttcgaa 15416790  T
Q  175 aaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||||| |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||    
T  15416789 aaatcttttacatacattctttatgactcttttctctcgcaccggtacttcgagtgttttagaattatgtataggtgatatgcgac 15416704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 58 - 260
Target Start/End: Original strand, 3743380 - 3743587
Alignment:
Q  58 tgtggcgtctttcgacagaaaaaaggtttt--aaaagcaaagttaaggcatt-aagttt-aaattgcaggaacttaaaggaaaggtaaaatacaatgcat 153  Q
    ||||| ||||||||||| ||||| ||||||  || || ||||| |||||||| |||||| ||||||||| | ||| |||||||  |||| ||||| ||||    
T  3743380 tgtggtgtctttcgacaaaaaaagggttttttaacagtaaagtaaaggcattcaagtttgaaattgcagaatcttgaaggaaaaataaagtacaaggcat 3743479  T
Q  154 taaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatg-ttttagaattttgtataggtga 252  Q
    ||||||||||||| ||||||||||||||||  ||||||| ||||| ||||||||||   || |||||||||||| || |||||||||| |||||||||||    
T  3743480 taaaaataaaggtggttcgacaaatcctttgtatacattttttatgactcttttcttcagcaccggtacttcgagtgtttttagaattatgtataggtga 3743579  T
Q  253 tttgcgac 260  Q
    ||||||||    
T  3743580 tttgcgac 3743587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 4173615 - 4173459
Alignment:
Q  105 attaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactc 203  Q
    |||||||||||||||||| ||||||||| |||    |||| ||| ||||||||| |||||  ||||||||||||||||||||||||||||||||| ||||    
T  4173615 attaagtttaaattgcagaaacttaaagaaaaatacaaatgcaagtgcattaaagataaaactagttcgacaaatcctttacatacattctttatgactc 4173516  T
Q  204 ttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    |||||||||||  || |||||||| |||||||||||| | |||||| ||||||||||    
T  4173515 ttttctctcgcgtcgatacttcgagtgttttagaattctctataggcgatttgcgac 4173459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 98 - 260
Target Start/End: Original strand, 24832402 - 24832570
Alignment:
Q  98 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 190  Q
    |||| |||||||||||||||||||| ||||||||| ||||  |||||||||       |||||||||||||| ||| ||||||||||| |||||||||||    
T  24832402 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatacaaatgcaagtgcattaaaaataatggtggttcgacaaattctttacataca 24832501  T
Q  191 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    |||||||| |||||||||||| || ||| |||||||| ||||||| |||| |||||||| ||||||||||    
T  24832502 ttctttatgactcttttctcttgcgccgatacttcgagtgtttta-aattctgtataggcgatttgcgac 24832570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 260
Target Start/End: Complemental strand, 10649318 - 10649240
Alignment:
Q  181 tttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||| |||||| ||| ||| |||| ||||||||||||    
T  10649318 tttacatacattctttataactcttttctctcgtgccggtacttcgagtgtttt-gaaatttctataagtgatttgcgac 10649240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 5531784 - 5531725
Alignment:
Q  182 ttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattt 241  Q
    ||||||||||| | ||| ||||||||||||||| |||||||||||| |||| || |||||    
T  5531784 ttacatacattttgtataactcttttctctcgcaccggtacttcgagtgttgtataattt 5531725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 18046386 - 18046501
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcct-ttacatacattctttatcactcttttctctcgctccggtac 222  Q
    ||||||||| ||||||||| | || |||||||||| ||||||| |||||||||||| | ||||| ||||| | |||    ||||| |||||| |||||||    
T  18046386 aacttaaagaaaaggtaaattgcattgcattaaaa-taaaggtggttcgacaaatcatattacacacattatgtat--gccttttttctcgcgccggtac 18046482  T
Q  223 ttcgaatgttttagaattt 241  Q
    ||| | |||||||||||||    
T  18046483 ttcaattgttttagaattt 18046501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 14961170 - 14961215
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagt 169  Q
    |||| |||| ||||||||||| || |||||||||||||||||||||    
T  14961170 aactcaaagaaaaggtaaaatgcattgcattaaaaataaaggtagt 14961215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 15390642 - 15390687
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagt 169  Q
    |||| |||| ||||||||||| || |||||||||||||||||||||    
T  15390642 aactcaaagaaaaggtaaaatgcattgcattaaaaataaaggtagt 15390687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 8e-70; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 58 - 260
Target Start/End: Complemental strand, 22397777 - 22397575
Alignment:
Q  58 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaa-ggaaaggtaaaatacaatgcattaa 156  Q
    ||||||||||||||||| ||||||||||||||||| |||||    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  22397777 tgtggcgtctttcgacaaaaaaaaggttttaaaagaaaagtct--gcattaagtttaaattgcagaaacttaaaaggaaaggtaaaatacaatgcattaa 22397680  T
Q  157 aaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatg-ttttagaattttgtataggtgattt 255  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| || |||||||||| ||||||||||||||    
T  22397679 aaataaaggttgttcgacaaatcctttacatacattctttatgactattttctctcgcgccggtacttcgagtgtttttagaattctgtataggtgattt 22397580  T
Q  256 gcgac 260  Q
    |||||    
T  22397579 gcgac 22397575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 67 - 260
Target Start/End: Original strand, 17524797 - 17524991
Alignment:
Q  67 tttcgacagaaaaaaggtttt-aaaagcaaagttaaggcattaagtttaaa-ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 164  Q
    |||||| | |||||||||||| |||| |||||| |||| ||||| |||||| ||| || ||||||||| |||  |||| || ||||||||||||||||||    
T  17524797 tttcgataaaaaaaaggtttttaaaaacaaagtaaaggaattaattttaaaattgtagaaacttaaagaaaaaataaattataatgcattaaaaataaag 17524896  T
Q  165 gtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    || || |||||| ||||||| ||||||||||||| ||||||||||||| | || | ||||||| |||||||||||| |||||||||||||||||||    
T  17524897 gttgtccgacaa-tcctttaaatacattctttatgactcttttctctcacgccagcacttcgagtgttttagaattatgtataggtgatttgcgac 17524991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 1177349 - 1177236
Alignment:
Q  149 tgcattaaaaataaaggtagttcgacaaatcctttacatacat----tctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgt 244  Q
    |||||||||||||||||| ||||||||||||||||||||||||    ||||||| ||||||||||||||| |  ||||||||| |||||||||||| |||    
T  1177349 tgcattaaaaataaaggtggttcgacaaatcctttacatacatgtattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgt 1177250  T
Q  245 ataggtgatttgcg 258  Q
    |||| |||||||||    
T  1177249 atagatgatttgcg 1177236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 16177304 - 16177415
Alignment:
Q  149 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 248  Q
    ||||||||||||||| || |||||| |||||||||||||||||||||||| ||||||||||||      |||||||||| ||||||||||||||||||||    
T  16177304 tgcattaaaaataaatgtggttcgaaaaatcctttacatacattctttatgactcttttctcttatgttggtacttcgagtgttttagaattttgtatag 16177403  T
Q  249 gtgatttgcgac 260  Q
    || |||||||||    
T  16177404 gttatttgcgac 16177415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 124 - 241
Target Start/End: Complemental strand, 17948007 - 17947890
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 223  Q
    |||||||||||||| |||| | || || ||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||| |||| || ||| ||||    
T  17948007 aacttaaaggaaagataaattgcattgaattaaaaataaaggtggttcgacaaatcctttacatacattttatataactctttcctcttgcgccgttact 17947908  T
Q  224 tcgaatgttttagaattt 241  Q
    ||||||||| ||||||||    
T  17947907 tcgaatgttgtagaattt 17947890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 18713709 - 18713842
Alignment:
Q  108 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 207  Q
    ||||| ||| ||||| ||||||||| || | |||| | || ||| |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||    
T  18713709 aagttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattctgtataactctttt 18713808  T
Q  208 ctctcgctccggtacttcgaatgttttagaattt 241  Q
    ||||||   |||||||| || |||| ||||||||    
T  18713809 ctctcgtgacggtactttgagtgttatagaattt 18713842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 14763090 - 14762939
Alignment:
Q  108 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 207  Q
    ||||| ||| ||||| ||||||||| |||| |||| | || |||||||||||||||||| |||||| || ||||||||||||||||| ||| ||||||||    
T  14763090 aagttaaaagtgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgagaactcctttacatacattctgtataactctttt 14762991  T
Q  208 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||||||   | ||||||||| || | ||||| ||| |||| ||||||||||||    
T  14762990 ctctcgtgtcagtacttcgagtgatgtagaa-tttctataagtgatttgcgac 14762939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 153 - 260
Target Start/End: Original strand, 15830026 - 15830133
Alignment:
Q  153 ttaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtga 252  Q
    ||||||||||| ||  ||||||||||| |||||||||||| ||||| ||||||||||||| | | | ||||| || |||||||||||| |||||||| ||    
T  15830026 ttaaaaataaaagtgattcgacaaatcttttacatacattatttatgactcttttctctcacactgatactttgagtgttttagaattctgtataggcga 15830125  T
Q  253 tttgcgac 260  Q
    ||||||||    
T  15830126 tttgcgac 15830133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 31126351 - 31126249
Alignment:
Q  98 ttaaggcattaagttt-aaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacatac 189  Q
    |||| ||||||||||| ||||||||| |||| |||| ||||  |||||||||       ||||||| |||||||||| ||||| ||||||||||||||||    
T  31126351 ttaatgcattaagttttaaattgcagaaactcaaagaaaagaaaaaatacaaatgcaagtgcattataaataaaggtggttcggcaaatcctttacatac 31126252  T
Q  190 att 192  Q
    |||    
T  31126251 att 31126249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 25945847 - 25945889
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 166  Q
    ||||||||||| ||||||||| || ||||||||||||||||||    
T  25945847 aacttaaaggagaggtaaaatgcattgcattaaaaataaaggt 25945889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 211
Target Start/End: Original strand, 28712360 - 28712461
Alignment:
Q  110 gtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcct-ttacatacattctttatcactcttttc 208  Q
    |||||||  |||| ||||||||| ||||||||| |||| ||||||||   ||||||| ||||||||||||   ||||||||||| | ||| |||||||||    
T  28712360 gtttaaaacgcagaaacttaaagaaaaggtaaattacattgcattaatg-taaaggtggttcgacaaatcagattacatacattatatatgactcttttc 28712458  T
Q  209 tct 211  Q
    |||    
T  28712459 tct 28712461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 13002906 - 13002854
Alignment:
Q  160 taaaggtagttcgacaaatcc-tttacatacattctttatcactcttttctct 211  Q
    ||||||| ||||||||||||  |||||||||||||| ||| ||||||||||||    
T  13002906 taaaggtggttcgacaaatcagtttacatacattctgtatgactcttttctct 13002854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 19218177 - 19218002
Alignment:
Q  84 ttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt 183  Q
    ||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  19218177 ttttaaaagcaaagtaaaggcattaagtttaaattgtagaaacttaaaggaaatgtaaaatacaatgcattaaaaataaaggtggttcgacaaatccttt 19218078  T
Q  184 acatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    |||||||||||||||  |||||||||||||| ||||||||| || |||||||||| |||||||||||||||||||||    
T  19218077 acatacattctttatggctcttttctctcgcgccggtactttgagtgttttagaa-tttgtataggtgatttgcgac 19218002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 257
Target Start/End: Original strand, 20060802 - 20060968
Alignment:
Q  98 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 190  Q
    |||| |||||||||||||||||||| ||||||||| ||||  |||||||||       |||||||||||||||||| |||||||||||||||||||||||    
T  20060802 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatacaaatgcaagtgcattaaaaataaaggtggttcgacaaatcctttacataca 20060901  T
Q  191 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 257  Q
    || ||||| |||||||||||| || |||||| ||| |||||||||||||| |||||||| |||||||    
T  20060902 ttgtttatgactcttttctcttgcgccggtagttcaaatgttttagaattctgtataggcgatttgc 20060968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 98 - 257
Target Start/End: Complemental strand, 20058824 - 20058658
Alignment:
Q  98 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 190  Q
    |||| |||||||||||||||||||| ||||||||  |||   |||||||||       |||||||||||||||||| ||||||||||| |||||||||||    
T  20058824 ttaatgcattaagtttaaattgcagaaacttaaataaaataaaaaatacaaatgcaattgcattaaaaataaaggtggttcgacaaattctttacataca 20058725  T
Q  191 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 257  Q
    |||||||| |||||||||||| || |  |||||| |||||||||||||||||| ||||| |||||||    
T  20058724 ttctttatgactcttttctcttgcgctagtactttgaatgttttagaattttgcataggcgatttgc 20058658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 20064653 - 20064484
Alignment:
Q  98 ttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacataca 190  Q
    |||| |||||||||||||||||||| ||||||||| ||||  |||||| ||       |||||||||||||||||| |||| ||||||| ||||||||||    
T  20064653 ttaatgcattaagtttaaattgcagaaacttaaagaaaagaaaaaatataaatgcaagtgcattaaaaataaaggtggttcaacaaatcatttacataca 20064554  T
Q  191 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    || ||||| |||||||||||| || |||||||||  | |||||||||||| |||||||| ||||||||||    
T  20064553 ttttttataactcttttctcttgcaccggtactttcagtgttttagaattctgtataggcgatttgcgac 20064484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 23210240 - 23210129
Alignment:
Q  149 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 248  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||  |||||||||||| || |||||||||||| |||||||||||| ||||||     
T  23210240 tgcattaaaaataaaagtggttcgacaaatcctttacatacattctttaagactcttttctcttgcgccggtacttcgagtgttttagaattatgtatat 23210141  T
Q  249 gtgatttgcgac 260  Q
      ||||||||||    
T  23210140 acgatttgcgac 23210129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 20713228 - 20713339
Alignment:
Q  149 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 248  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||||||| |||||||||||| ||  ||||| ||||| |||||||||||| ||||||     
T  20713228 tgcattaaaaataaaggttgttcaacaaatctgttacatacattctttatgactcttttctcttgcatcggtatttcgagtgttttagaattctgtatat 20713327  T
Q  249 gtgatttgcgac 260  Q
    | ||||||||||    
T  20713328 gcgatttgcgac 20713339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 19924112 - 19924022
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgc 214  Q
    ||||||||| |||| |||| |||| |||||||||||||||||| |||||||||||| |||| ||||||||| ||| |||||||||||||||    
T  19924112 aacttaaagaaaagataaattacattgcattaaaaataaaggtggttcgacaaatcttttatatacattctgtataactcttttctctcgc 19924022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 225
Target Start/End: Complemental strand, 17167417 - 17167316
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 223  Q
    ||||||||| |||| |||| | || | |||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||||||||| | ||||||    
T  17167417 aacttaaagaaaagataaattgcattacattaaaaataaaggtggttcgacaaatcctttacatacattttgtattactcttttctctcgcgctggtact 17167318  T
Q  224 tc 225  Q
    ||    
T  17167317 tc 17167316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 24878356 - 24878489
Alignment:
Q  108 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 207  Q
    |||||||||  |||| ||||||||| |||| |||| | || |||||||||||||||||| ||| ||||||||||||||||| |||   ||| ||||||||    
T  24878356 aagtttaaaacgcagaaacttaaagaaaagataaattgcattgcattaaaaataaaggtggtttgacaaatcctttacataaattacgtataactctttt 24878455  T
Q  208 ctctcgctccggtacttcgaatgttttagaattt 241  Q
    |||||||  ||||| ||||| |||| ||||||||    
T  24878456 ctctcgcgtcggtaattcgagtgttgtagaattt 24878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 23379474 - 23379394
Alignment:
Q  180 ctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||||||||||||||||||| ||||||||||||||| |  ||||||||| |||||||||||| || ||||||||||||||||    
T  23379474 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgcataggtgatttgcgac 23379394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 25951334 - 25951425
Alignment:
Q  168 gttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    |||||||||||| |||||||||||||||||| |||||||||||||  | |||||||| || |||||||||||| |||||| | ||||| ||||    
T  25951334 gttcgacaaatcttttacatacattctttatgactcttttctctctgt-cggtactttgagtgttttagaattatgtataagcgatttacgac 25951425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 19926839 - 19926749
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgc 214  Q
    ||||||||| |||| |||| | || |||||||||||||||||| |||||||||||| ||||  |||||||| ||| ||| |||||||||||    
T  19926839 aacttaaagaaaagataaattgcattgcattaaaaataaaggtggttcgacaaatcttttatttacattctgtataactattttctctcgc 19926749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 260
Target Start/End: Original strand, 17987482 - 17987617
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatc-ctttacatacattctttatcactcttttctctcg-ctccggta 221  Q
    |||| |||||||||||||||| || |||||||||||||||||| | || |||||||  | |||||||||||| ||| |||| |||| || | |  |||||    
T  17987482 aactcaaaggaaaggtaaaatgcattgcattaaaaataaaggt-ggtctacaaatcagtctacatacattctgtataactcgtttccctagacgtcggta 17987580  T
Q  222 cttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
     || || |||||||||||| ||||||  |||||||||||    
T  17987581 gtttgagtgttttagaattctgtata--tgatttgcgac 17987617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 91
Target Start/End: Original strand, 24878288 - 24878319
Alignment:
Q  60 tggcgtctttcgacagaaaaaaggttttaaaa 91  Q
    ||||||||||||||||||||||||||||||||    
T  24878288 tggcgtctttcgacagaaaaaaggttttaaaa 24878319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 25951260 - 25951292
Alignment:
Q  104 cattaagtttaaattgcaggaacttaaaggaaa 136  Q
    ||||||||||||||||||| |||||||||||||    
T  25951260 cattaagtttaaattgcagaaacttaaaggaaa 25951292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 65 - 260
Target Start/End: Complemental strand, 24699275 - 24699082
Alignment:
Q  65 tctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 164  Q
    |||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  24699275 tctttcgacagaaaaagggtttcataagcaaagtaaaggcattaagtttaaattgcataaacttaaaggaaaggtaaaatacaatgcattaaaaataaag 24699176  T
Q  165 gtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    || ||||||||||||||||| ||||||||||  | | ||||||||||||| |||||||||||| |||||||||||| |||||||| ||||||||||    
T  24699175 gtggttcgacaaatcctttaaatacattctt--tgattcttttctctcgcgccggtacttcgagtgttttagaattctgtataggggatttgcgac 24699082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 64 - 260
Target Start/End: Original strand, 26010836 - 26011034
Alignment:
Q  64 gtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaa---ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaat 160  Q
    ||||||||||||||||  | ||||||||||||||| ||||||||||||||||    |||||| |||||||||||||| ||||||||||||| ||||||||    
T  26010836 gtctttcgacagaaaag-gtttttaaaagcaaagtaaaggcattaagtttaataacttgcagaaacttaaaggaaagataaaatacaatgctttaaaaat 26010934  T
Q  161 aaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    |||||| |||||||||||| |||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||  ||||||||||||||||||    
T  26010935 aaaggtggttcgacaaatcatttacatacattctttatgactctattctctcgcgccggtacttcgagtgttttagaattcggtataggtgatttgcgac 26011034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 58 - 260
Target Start/End: Original strand, 15686859 - 15687062
Alignment:
Q  58 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 157  Q
    |||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  15686859 tgtggcgtgtttcgatagaaaaagggttttaaaagcaaagtaaaggcattaagtttaaattgcagaaacttaaagcaaaggtaaaatacaatgcattaaa 15686958  T
Q  158 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaat-gttttagaattttgtataggtgatttg 256  Q
    ||||||||| || | | |||||| || |||||||||||||  |||||||||||||||  ||||||||||| |  ||||||||||  ||||||||||||||    
T  15686959 aataaaggtggtcctaaaaatccatttcatacattctttaagactcttttctctcgcgtcggtacttcgagtatttttagaattcagtataggtgatttg 15687058  T
Q  257 cgac 260  Q
    ||||    
T  15687059 cgac 15687062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 77 - 260
Target Start/End: Complemental strand, 13428914 - 13428733
Alignment:
Q  77 aaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaa 176  Q
    |||| ||||||||||||||||| || |||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||| || |||| ||||    
T  13428914 aaaagggttttaaaagcaaagtaaatgcattaagtttaaattgcagaaatttaaaggaaagataaaatacaatgcattaataataaatgtggttcaacaa 13428815  T
Q  177 atcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    |||||||||||||||||||||| ||||||||||||| |  ||||||||||| ||||||||||  || |||||||||||||||||    
T  13428814 atcctttacatacattctttattactcttttctctcacgtcggtacttcgagtgttttagaa--ttatataggtgatttgcgac 13428733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 85 - 256
Target Start/End: Original strand, 4769742 - 4769913
Alignment:
Q  85 tttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttta 184  Q
    |||||||||||||| ||||||||||||||||||| ||  ||||||||||||||   ||||||||||||||| |||||||||| |||||| |||| | |||    
T  4769742 tttaaaagcaaagtaaaggcattaagtttaaatttcataaacttaaaggaaagaataaatacaatgcattagaaataaaggtggttcgaaaaattcgtta 4769841  T
Q  185 catacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttg 256  Q
    |||||||||||||| |||||||||||| || | |||| ||||| |||||||||||| ||||||| |||||||    
T  4769842 catacattctttatgactcttttctcttgcgctggtatttcgagtgttttagaattatgtatagatgatttg 4769913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 60 - 260
Target Start/End: Complemental strand, 4765916 - 4765710
Alignment:
Q  60 tggcgtctttcgacagaaaaaaggtttt-aaaagcaaagttaaggcattaagtttaaa-ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 157  Q
    |||||||||||||||  |||| |||||| ||||||||||| ||||||||||||||||| |||||  |||||||||||||  |||| ||||||||||||||    
T  4765916 tggcgtctttcgacatgaaaagggtttttaaaagcaaagtaaaggcattaagtttaaaattgcataaacttaaaggaaaaataaagtacaatgcattaaa 4765817  T
Q  158 aataaaggtagttcgacaaatcctttacatac----attctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgat 253  Q
    | ||||||| |||||||||||| |||||||||    ||||||||| ||||||||||||||| |  |||| || | |||||||||||  | ||||||||||    
T  4765816 agtaaaggtggttcgacaaatcatttacatacattaattctttatgactcttttctctcgcgctagtacatcaagtgttttagaatactatataggtgat 4765717  T
Q  254 ttgcgac 260  Q
    |||||||    
T  4765716 ttgcgac 4765710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 259
Target Start/End: Complemental strand, 4832740 - 4832538
Alignment:
Q  58 tgtggcgtctttcgacagaaaaaagg-ttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaa 156  Q
    |||| |||||||||| |||||||||| |||| ||||||| || ||| ||||||||||||||||||  |||| ||||||||  ||||||||||||||||||    
T  4832740 tgtgacgtctttcgaaagaaaaaagggtttttaaagcaaggtaaagacattaagtttaaattgcataaactcaaaggaaaattaaaatacaatgcattaa 4832641  T
Q  157 aaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttg 256  Q
    | |||||||| || |  || |||||||| ||| ||||||| | ||||||||||||| | ||  | |||||| |||||||||||| |||||||||||||||    
T  4832640 atataaaggtggtccagcagatcctttaaatatattctttgtgactcttttctctcacaccaatgcttcgagtgttttagaattctgtataggtgatttg 4832541  T
Q  257 cga 259  Q
    |||    
T  4832540 cga 4832538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 114 - 256
Target Start/End: Original strand, 23378488 - 23378631
Alignment:
Q  114 aaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcga-caaatcctttacatacattctttatcactcttttctctc 212  Q
    |||||| || |||||||||||||| |||| | || |||||||||||||||||| |||| | ||||||||||||||||||| | ||| |||||||||||||    
T  23378488 aaattgtagaaacttaaaggaaagataaattgcattgcattaaaaataaaggtggttcaaacaaatcctttacatacattatgtatgactcttttctctc 23378587  T
Q  213 gctccggtacttcgaatgttttagaattttgtataggtgatttg 256  Q
    || ||| |||||||| | ||||||||||||||||| ||||||||    
T  23378588 gcgccgatacttcgagtattttagaattttgtataagtgatttg 23378631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 249
Target Start/End: Original strand, 7148790 - 7148890
Alignment:
Q  149 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtatag 248  Q
    |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||| | | |||||||||| |||||||    
T  7148790 tgcattaaaagtaaaagtggttcgacaaatcctttacatacattctttatgactcttttctctcgcgtcggtacttcaactattttagaattctgtatag 7148889  T
Q  249 g 249  Q
    |    
T  7148890 g 7148890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 16243069 - 16242979
Alignment:
Q  149 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaat 239  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||   |||||||||| |||||||||||    
T  16243069 tgcattaaaaataaaagtggttcgacaaatgctttacatacattctttatgactcttttctctcgcgttggtacttcgagtgttttagaat 16242979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 29614724 - 29614615
Alignment:
Q  152 attaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgtt-ttagaattttgtataggt 250  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |   ||||||||||| |||| |||||||| | ||||||     
T  29614724 attaaaaataaaggtggttcgacaaatcctttacatacattatttatgactcttttctcttgtgtcggtacttcgagtgttcttagaattatatataggc 29614625  T
Q  251 gatttgcgac 260  Q
    ||||||||||    
T  29614624 gatttgcgac 29614615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 9033622 - 9033501
Alignment:
Q  141 aaatacaa-tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgtttt-agaa 238  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| | ||  |||||||| || ||| |||||||| |||||| | ||    
T  9033622 aaatacaagtgcattaaaaataaaggtggtttgacaaatcctttacatacattctttgtgaccattttctcttgcgccgatacttcgagtgttttgaaaa 9033523  T
Q  239 ttttgtataggtgatttgcgac 260  Q
    || |||||||| ||| ||||||    
T  9033522 ttctgtataggcgatatgcgac 9033501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 27304547 - 27304424
Alignment:
Q  118 tgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctcc 217  Q
    ||||| ||||||||| |||  |||| | || ||||||||||||||| || ||| ||||||| || |||||||||| | ||| | ||||||||||||  ||    
T  27304547 tgcagaaacttaaagaaaatataaattgcattgcattaaaaataaaagtggtttgacaaattctatacatacattttgtataattcttttctctcgagcc 27304448  T
Q  218 ggtacttcgaatgttttagaattt 241  Q
    | ||||| || |||| ||||||||    
T  27304447 gatactttgagtgttgtagaattt 27304424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 13409834 - 13409876
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 166  Q
    ||||||||||||||||||||| || ||||||||||||||||||    
T  13409834 aacttaaaggaaaggtaaaatgcattgcattaaaaataaaggt 13409876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 8737308 - 8737234
Alignment:
Q  118 tgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 192  Q
    ||||| || |||||| |||| |||| | || |||||| ||||||||||| |||| ||||||||||||||| ||||    
T  8737308 tgcagaaagttaaagaaaagctaaattgcattgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 8737234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 9089546 - 9089472
Alignment:
Q  118 tgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacatt 192  Q
    ||||| || |||||| |||| |||| | || |||||| ||||||||||| |||| ||||||||||||||| ||||    
T  9089546 tgcagaaagttaaagaaaagctaaattgcattgcatttaaaataaaggtggttcaacaaatcctttacatgcatt 9089472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 58 - 253
Target Start/End: Original strand, 11361595 - 11361790
Alignment:
Q  58 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 157  Q
    ||||| |||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  11361595 tgtggtgtcttttgacaggaaaaaagttttaaaagcaaagtaaaggcattaagtttaaattgcagaaatttaaatgaaaggtaaaatacaatgcattaaa 11361694  T
Q  158 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgat 253  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||||||||| |||||  |||||  |||| |||||||||||| ||||||||||||    
T  11361695 aataaaggtggttcgacaaatcctttacatacattctttgtaactcttttccctcgcgtcggtaagtcgagtgttttagaattctgtataggtgat 11361790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 65 - 260
Target Start/End: Complemental strand, 9409370 - 9409174
Alignment:
Q  65 tctttcgacagaaaaaaggttttaaaa-gcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaa 163  Q
    |||| ||||||||||  |||||||||| ||||||| || | |||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  9409370 tcttacgacagaaaaggggttttaaaaagcaaagtaaaagtattaagtttaaattgcataaacttaaaggaaagataaaatacaatgcattaaaaataaa 9409271  T
Q  164 ggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||| ||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||| |||||||||||| | |||| ||||||||||||    
T  9409270 ggtggttcgacaaatcctttacatacattctttataacttttttctcttgcgccggtacttcgagtgttttagaattctatataagtgatttgcgac 9409174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 16675086 - 16675218
Alignment:
Q  108 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttt 206  Q
    ||||||||| ||||| ||| ||||| ||||||||| |  | |||||| |||||||| || |||||||||||| ||| ||||||||||| ||| ||||| |    
T  16675086 aagtttaaaatgcagaaacataaagaaaaggtaaattgtattgcatttaaaataaaagtggttcgacaaatcattttacatacattctgtataactctct 16675185  T
Q  207 tctctcgctccggtacttcgaatgttttagaat 239  Q
    |||||||| |||||||||||| |||||||||||    
T  16675186 tctctcgcaccggtacttcgagtgttttagaat 16675218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 5358040 - 5358102
Alignment:
Q  149 tgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctct 211  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||    
T  5358040 tgcattaaaaataaaggtagttcgacaaatcatttacatacattatgtatgactcttttctct 5358102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 18558515 - 18558473
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggt 166  Q
    ||||||||||||| ||||||| || ||||||||||||||||||    
T  18558515 aacttaaaggaaatgtaaaatgcattgcattaaaaataaaggt 18558473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 8140832 - 8140896
Alignment:
Q  191 ttctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttg 256  Q
    |||| ||| ||||||| ||||||| |||||||||| | |||||||||||||| |||| ||||||||    
T  8140832 ttctatataactctttactctcgcgccggtacttcaagtgttttagaatttt-tataagtgatttg 8140896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 84 - 257
Target Start/End: Complemental strand, 11014027 - 11013853
Alignment:
Q  84 ttttaaaagcaaagttaaggcattaagtttaaa-ttgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctt 182  Q
    ||||||||||||||| ||||||||||||||||| || | | |||||||||||||  |||| ||||||||||||||||||||||| | |||||||||||||    
T  11014027 ttttaaaagcaaagtaaaggcattaagtttaaaattcctgaaacttaaaggaaaaataaagtacaatgcattaaaaataaaggtggctcgacaaatcctt 11013928  T
Q  183 tacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 257  Q
    |||||| ||||||||| |||||||||||||   | |||| ||||| ||||||| |||||||||||||||||||||    
T  11013927 tacatatattctttatgactcttttctctcaagctggtatttcgagtgttttaaaattttgtataggtgatttgc 11013853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 114 - 260
Target Start/End: Original strand, 33103021 - 33103167
Alignment:
Q  114 aaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcg 213  Q
    ||||||||| |||||||||||||| |||| | || ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||     
T  33103021 aaattgcagaaacttaaaggaaagataaattgcattgcattaaaaataaatgtagttcgacaaatcctttacatacattctatatgactcttttctctca 33103120  T
Q  214 ctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    |  ||||||||||| |||||||||||| |||||||||||||||||||    
T  33103121 cgtcggtacttcgagtgttttagaattatgtataggtgatttgcgac 33103167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 20146169 - 20146332
Alignment:
Q  103 gcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaa-------tgcattaaaaataaaggtagttcgacaaatcctttacatacattctt 195  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| ||       |||||||||||||||| | || | | ||||||||||||||||| |||    
T  20146169 gcattaagtttaaattgcagaaacttaaagaaaaggaaaaataaaaatgcaagtgcattaaaaataaagatggtccaaaaaatcctttacatacat-ctt 20146267  T
Q  196 tatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||| ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||    
T  20146268 tatgactcttttctctcgcaccggtactttgagtgttttagaattttgtataggtgatttgcgac 20146332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 22608003 - 22607874
Alignment:
Q  108 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 207  Q
    ||||| ||||||||| || ||||||||||| |||| |||| |||||||||||||||||| ||||  || |||||||||||||||| ||||| ||||||||    
T  22608003 aagttaaaattgcag-aatttaaaggaaagataaactacattgcattaaaaataaaggtggttcagcagatcctttacatacattttttataactctttt 22607905  T
Q  208 ctctcgctccggtacttcgaatgttttagaa 238  Q
    |||| ||  ||||||||||| |||| |||||    
T  22607904 ctcttgcgacggtacttcgattgttatagaa 22607874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 13202192 - 13202085
Alignment:
Q  152 attaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtg 251  Q
    ||||||||||||||| ||||||||||||||||||||||||| | ||| ||| ||||||||||| |||||| ||||| |||| ||||| ||| |||| |||    
T  13202192 attaaaaataaaggtggttcgacaaatcctttacatacattatgtataactattttctctcgcgccggtatttcgagtgttgtagaa-tttctataagtg 13202094  T
Q  252 atttgcgac 260  Q
    |||||||||    
T  13202093 atttgcgac 13202085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 108 - 260
Target Start/End: Complemental strand, 36571826 - 36571676
Alignment:
Q  108 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 207  Q
    ||||| ||| ||||| ||||||||| |||| | || | || |||||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||    
T  36571826 aagttaaaactgcagaaacttaaag-aaagattaattgcattgcattaaaaataaaggtggttcgacaaatcctttacatacattatgtataactctttt 36571728  T
Q  208 ctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||||||  |  ||||||||| |||| ||||| ||| |||| ||||||||||||    
T  36571727 ctctcgtgctagtacttcgagtgttgtagaa-tttctataagtgatttgcgac 36571676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 20150588 - 20150459
Alignment:
Q  127 ttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcg 226  Q
    |||||| |||| |||| || | || ||||||||||||||| ||| |||||||||||| ||| |||| | ||| ||| |||||||||||  ||||||||||    
T  20150588 ttaaagaaaagataaattatattgtattaaaaataaaggtggtttgacaaatcctttgcatgcattttgtatgacttttttctctcgcgtcggtacttcg 20150489  T
Q  227 aatgttttagaattttgtataggtgatttg 256  Q
    | |||| ||||||| |||||||||||||||    
T  20150488 agtgttgtagaattatgtataggtgatttg 20150459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 241
Target Start/End: Original strand, 17615274 - 17615391
Alignment:
Q  124 aacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtact 223  Q
    ||||||||| |||||| || | || |||||| ||||||||||| ||||||||||||||||||||||||| | | | |||||||| |||| | || |||||    
T  17615274 aacttaaagaaaaggttaactgcattgcattcaaaataaaggttgttcgacaaatcctttacatacattatgtgtaactcttttttctcccgcctgtact 17615373  T
Q  224 tcgaatgttttagaattt 241  Q
    |||| |||| ||||||||    
T  17615374 tcgagtgttgtagaattt 17615391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 22620153 - 22620063
Alignment:
Q  151 cattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattt 241  Q
    |||||||||||||||| |||||||||||| |||||||||  | |  || ||| ||||||||||||| |||||||||| |||| ||||||||    
T  22620153 cattaaaaataaaggtggttcgacaaatcttttacatacggtttgaataactattttctctcgctctggtacttcgagtgttgtagaattt 22620063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 20866221 - 20866293
Alignment:
Q  108 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcc 180  Q
    ||||| ||||||||| ||||||||| |||| |||| |    |||||||||||||||||| |||||||||||||    
T  20866221 aagttaaaattgcagaaacttaaagaaaagataaattgtgttgcattaaaaataaaggtggttcgacaaatcc 20866293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 20886571 - 20886607
Alignment:
Q  130 aaggaaaggtaaaatacaatgcattaaaaataaaggt 166  Q
    ||||||||||||||| || ||||||||||||||||||    
T  20886571 aaggaaaggtaaaatgcattgcattaaaaataaaggt 20886607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 58 - 260
Target Start/End: Original strand, 20793 - 20993
Alignment:
Q  58 tgtggcgtctttcgacagaaaaaaggttttaaaagcaaagttaaggcattaagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaa 157  Q
    |||||||||||| |||||||||| ||||||||||| |   | || |||||||||||||| ||||| ||||||||||||||  ||||| ||||||||| ||    
T  20793 tgtggcgtcttttgacagaaaaa-ggttttaaaagtagtataaatgcattaagtttaaaatgcagaaacttaaaggaaagaaaaaatgcaatgcatttaa 20891  T
Q  158 aataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgc 257  Q
    ||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||     ||||||| | |||||||||||| | |||| |||||||||    
T  20892 aataaaggtggttccacaaattctttacatacattctttatgactcttttctctcgtgttagtacttcaagtgttttagaattat-tatacgtgatttgc 20990  T
Q  258 gac 260  Q
    |||    
T  20991 gac 20993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 103 - 260
Target Start/End: Complemental strand, 5851 - 5687
Alignment:
Q  103 gcattaagtttaaattgcaggaacttaaaggaaaggtaaaata------caa-tgcattaaaaataaaggtagttcgacaaatcctttacatacattctt 195  Q
    |||||||||||||||||||  ||||||||| ||||| ||||||      ||| |||||||||||||||||| || |||||||| |||||||||||||| |    
T  5851 gcattaagtttaaattgcaaaaacttaaagaaaaggaaaaataacaatgcaagtgcattaaaaataaaggtggtccgacaaattctttacatacattcct 5752  T
Q  196 tatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||| |||||||| |||||   ||||||||| |  ||||||||||| |||||||||||||| ||||    
T  5751 tatgactcttttttctcgtgtcggtacttcaagcgttttagaattctgtataggtgatttacgac 5687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 17221 - 17336
Alignment:
Q  108 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 207  Q
    ||||| ||| ||||| ||||||||| || | |||| | || ||| |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||    
T  17221 aagttaaaagtgcagaaacttaaagaaatgataaattgcattgctttaaaaataaaggtggttcgacaaatcctttacatacattctgtataactctttt 17320  T
Q  208 ctctcgctccggtact 223  Q
    ||||||| ||||||||    
T  17321 ctctcgcgccggtact 17336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 4546 - 4661
Alignment:
Q  108 aagtttaaattgcaggaacttaaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactctttt 207  Q
    ||||| ||| ||||| ||||||||| ||   |||| | || ||| |||||||||||||| |||| ||||||| |||| || |||||| ||| ||||||||    
T  4546 aagttaaaagtgcagaaacttaaagaaataataaattgcattgctttaaaaataaaggtggttctacaaatcttttaaatgcattctgtataactctttt 4645  T
Q  208 ctctcgctccggtact 223  Q
    ||||||| ||||||||    
T  4646 ctctcgcgccggtact 4661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 12991 - 13071
Alignment:
Q  180 ctttacatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattttgtataggtgatttgcgac 260  Q
    ||||||||||||||||||| ||||||||||||||| |  ||||||||| |||||||||||| || ||||||||||||||||    
T  12991 ctttacatacattctttatgactcttttctctcgcgctagtacttcgagtgttttagaattctgcataggtgatttgcgac 13071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 260
Target Start/End: Complemental strand, 374275 - 374145
Alignment:
Q  128 taaaggaaaggtaaaatacaatgcattaaaaataaaggtagttcgacaaatcctttacatacattctttatcactcttttctctcgctccggtacttcga 227  Q
    |||||||||| |||| | || |||||||||||||||||| ||||||||||| ||||||||||||| | ||| ||||||||||||||| || |||||| ||    
T  374275 taaaggaaagataaattgcattgcattaaaaataaaggtggttcgacaaatactttacatacattttgtat-actcttttctctcgcgcctgtactttga 374177  T
Q  228 atgttttagaattttgtataggtgatttgcgac 260  Q
     |||| ||| | ||| |||| ||||||||||||    
T  374176 gtgttgtagca-tttctataagtgatttgcgac 374145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 20572 - 20671
Alignment:
Q  139 taaaatacaatgcattaaaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttttctctcgctccggtacttcgaatgttttaga 237  Q
    |||| |||| |||||||||| ||||||| ||| |||||||  ||| ||||||||| | ||| ||||||||||||||| |||||||||||| |||||||||    
T  20572 taaattacattgcattaaaa-taaaggtggtttgacaaattatttcacatacattatgtataactcttttctctcgcgccggtacttcgagtgttttaga 20670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 996 - 910
Alignment:
Q  156 aaaataaaggtagttcgacaaatccttt-acatacattctttatcactcttttctctcgctccggtacttcgaatgttttagaattt 241  Q
    ||||||||||| |||| ||||||| ||| ||||||||| | ||| |||||| | |||||| |||||||||||| |||||| ||||||    
T  996 aaaataaaggttgttcaacaaatcattttacatacattatgtataactcttctttctcgcgccggtacttcgagtgttttggaattt 910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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