View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_58 (Length: 250)
Name: NF1545_low_58
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_58 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 976232 - 976459
Alignment:
| Q |
7 |
aatatatacaactaaacaaaattttggctttcctatcctatagatcaaaaatgatgtaaagaagggtagatgatagctgcaatgcatcttgctatgcatt |
106 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
976232 |
aatatatacaactcaacaaaattttggctttcctatcctatagatcaaaaatgatgtaaagaagggtagatgatagctgcaatgcatcttgctgtgcatt |
976331 |
T |
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| Q |
107 |
gaaactcattccattttatacttaacaagaacgtacccaagatattataaactgcatgcctcgtcatagttgagtattctgggacattcgacatttccac |
206 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
976332 |
gaaactcgttccattttatacttaacaagaacgtacccaagatattataaactgcatgcctcgtcatagttgaatcttctgggacactcgacatttccac |
976431 |
T |
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| Q |
207 |
tgccttccaagtttcaaatctctgaatc |
234 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
976432 |
tgccttccaagtttcaaatctctgaatc |
976459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 418769 - 418584
Alignment:
| Q |
7 |
aatatatacaactaaacaaaattttggctttcctatcctatagatcaaaaatgatgtaaagaagggtagatgatagctgcaatgcatcttgctatgcatt |
106 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
418769 |
aatatatacaactcaacaaaattttggctttcctatcctatagatcaaaaatgatgtaaagaagggtagatcatagctgcaatgcatcttgctatgcatt |
418670 |
T |
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| Q |
107 |
gaaactcattccattttatacttaacaagaacgtacccaagatattataaactgcatgcctcgtcatagttgagtattctgggaca |
192 |
Q |
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| T |
418669 |
gaaactcgttccattttatacttaacaagaacgtacccaagatattataaactgcatgcctcgtcatagttgagtattctgggaca |
418584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 11802 - 11987
Alignment:
| Q |
7 |
aatatatacaactaaacaaaattttggctttcctatcctatagatcaaaaatgatgtaaagaagggtagatgatagctgcaatgcatcttgctatgcatt |
106 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11802 |
aatatatacaactcaacaaaattttggctttcctatcctatagatcaaaaatgatgtaaagaagggtagatcatagctgcaatgcatcttgctatgcatt |
11901 |
T |
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| Q |
107 |
gaaactcattccattttatacttaacaagaacgtacccaagatattataaactgcatgcctcgtcatagttgagtattctgggaca |
192 |
Q |
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| T |
11902 |
gaaactcgttccattttatacttaacaagaacgtacccaagatattataaactgcatgcctcgtcatagttgagtattctgggaca |
11987 |
T |
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