View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_60 (Length: 241)
Name: NF1545_low_60
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_60 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 13152989 - 13152761
Alignment:
| Q |
17 |
agtttttccaaacatgtgttacaccctaaattnnnnnnntaataaatttccaccatatacaaatcactgaactagtgggcctattagcaattctggcacc |
116 |
Q |
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| T |
13152989 |
agtttttccaaacatgtgttacaccctaaattaaaaaaataataaatttccaccatatacaaatcactgaactggtgggcctattagcaattctggcacc |
13152890 |
T |
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| Q |
117 |
atagttgatatagacacatgaacgattttaactttatatatgacacaatctata----ttagtatggacccaaaatacagagatgtggtgaaaaattagt |
212 |
Q |
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| T |
13152889 |
atagttgatatagacacatgaacgattttaactttatatatgacacaatctatataagttagtatggacccaaaatacagagatgtggtgaaaaattagt |
13152790 |
T |
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| Q |
213 |
gtaattttagctaattgaaaatgcaattt |
241 |
Q |
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| T |
13152789 |
gtaattttagctaattgaaaatgcaattt |
13152761 |
T |
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