View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_62 (Length: 238)
Name: NF1545_low_62
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13062315 - 13062535
Alignment:
| Q |
1 |
tataggttgcggcatgggagtaagcactggagtatccacccaagcctttaacctgtctgaatccacaactctaacatcaatgctaccctgctcaaaagaa |
100 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13062315 |
tataggttgcggcataggagtaagtactggagtatccacccaagcctttaacctgtctgaatccacaactctagcatcaatgctaccctgctcaaaagaa |
13062414 |
T |
|
| Q |
101 |
agggacgaagggttggggaatgacaccctcccaacattctgcctcatctgtttatcagaggagtcacccctagaaactggggacctatcatgctcagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13062415 |
agggacgaagggttggggaatgacaccctcccaacattctgcctcatctgtttatcagaggagtgacccctagaaactggggacctatcatgctcagaag |
13062514 |
T |
|
| Q |
201 |
catgcgccactggtttaggag |
221 |
Q |
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||| ||||||||||||||||| |
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| T |
13062515 |
catacgccactggtttaggag |
13062535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 29346576 - 29346473
Alignment:
| Q |
1 |
tataggttgcggcatgggagtaagcactggagtatccacccaagcctttaacctgtctgaatccacaactctaacatcaatgctaccctgctcaaaagaa |
100 |
Q |
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||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||| ||| |
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| T |
29346576 |
tataggttgcggcataggggtaagcactggagtatccacccaaacctttaacctgtctgaatccacacctctagcatcaaagctaccctgctcaaatgaa |
29346477 |
T |
|
| Q |
101 |
aggg |
104 |
Q |
| |
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|||| |
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|
| T |
29346476 |
aggg |
29346473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 3395950 - 3396020
Alignment:
| Q |
1 |
tataggttgcggcatgggagtaagcactggagtatccacccaagcctttaacctgtctgaatccacaactc |
71 |
Q |
| |
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||||| |||||| || |||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
3395950 |
tatagcttgcggtataggagtaagcactagagtatctacccaagcctttaacctgtctggatccacaactc |
3396020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 19408205 - 19408339
Alignment:
| Q |
1 |
tataggttgcggcatgggagtaagcactggagtatccacccaagcctttaacctgtctgaatccacaactctaacatcaatgctaccctgctcaaaagaa |
100 |
Q |
| |
|
||||||||| | ||| ||||||||||||||||| |||| ||||||||||||| |||| | ||||| |||||||||| | ||||| | ||||||| |||| |
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| T |
19408205 |
tataggttgagacatcggagtaagcactggagtttccatccaagcctttaacatgtcaggatccataactctaacagtagtgcta-cttgctcaatagaa |
19408303 |
T |
|
| Q |
101 |
agggacgaagggttggggaatgacaccctcccaaca |
136 |
Q |
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||||||| ||||||||||||||||| |||||||||| |
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| T |
19408304 |
agggacggagggttggggaatgacatcctcccaaca |
19408339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25167619 - 25167558
Alignment:
| Q |
1 |
tataggttgcggcatgggagtaagcactggagtatccacccaagcctttaacctgtctgaat |
62 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||| ||||||| |
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|
| T |
25167619 |
tataggttgaggcataggagtaagcactggagtatctacccaagtctttaacctatctgaat |
25167558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 10989765 - 10989693
Alignment:
| Q |
3 |
taggttgcggcatgggagtaagcactggagtatccacccaagcctttaacctgtctgaatccacaactctaac |
75 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| |||||| |||| ||||||| || | ||||||||||||| |
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| T |
10989765 |
taggttgtggcataggagtaagcactggagtatctacccaatccttcaacctgtttggagccacaactctaac |
10989693 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 37049776 - 37049718
Alignment:
| Q |
1 |
tataggttgcggcatgggagtaagcactggagtatccacccaagcctttaacctgtctg |
59 |
Q |
| |
|
||||||||| ||||| ||||||||| |||||||||||||| ||| ||||||||| |||| |
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| T |
37049776 |
tataggttgaggcataggagtaagccctggagtatccaccgaagtctttaacctatctg |
37049718 |
T |
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