View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1545_low_65 (Length: 227)

Name: NF1545_low_65
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1545_low_65
NF1545_low_65
[»] chr7 (10 HSPs)
chr7 (82-222)||(43118095-43118235)
chr7 (1-83)||(37873415-37873497)
chr7 (1-83)||(24825557-24825639)
chr7 (1-83)||(32793078-32793160)
chr7 (4-82)||(37879148-37879226)
chr7 (1-81)||(24825855-24825935)
chr7 (4-81)||(32792783-32792860)
chr7 (4-83)||(11324346-11324425)
chr7 (14-78)||(9402563-9402627)
chr7 (15-78)||(11324056-11324119)
[»] chr5 (6 HSPs)
chr5 (1-82)||(31155637-31155718)
chr5 (1-82)||(39760423-39760504)
chr5 (1-81)||(31155893-31155973)
chr5 (1-81)||(39761609-39761689)
chr5 (1-82)||(31156188-31156269)
chr5 (21-83)||(31155368-31155430)
[»] chr1 (11 HSPs)
chr1 (1-90)||(52331398-52331487)
chr1 (1-81)||(7709700-7709780)
chr1 (1-82)||(7709997-7710078)
chr1 (1-82)||(52331702-52331783)
chr1 (4-80)||(13618399-13618475)
chr1 (2-83)||(34492525-34492606)
chr1 (4-80)||(13618582-13618658)
chr1 (1-81)||(37646952-37647032)
chr1 (15-83)||(13618254-13618322)
chr1 (16-81)||(34492237-34492302)
chr1 (49-83)||(37646740-37646774)
[»] chr4 (15 HSPs)
chr4 (1-81)||(23254377-23254457)
chr4 (1-80)||(15874229-15874308)
chr4 (1-82)||(23254672-23254753)
chr4 (1-90)||(41315890-41315979)
chr4 (1-85)||(15874523-15874607)
chr4 (1-82)||(38484460-38484541)
chr4 (1-90)||(42305896-42305985)
chr4 (1-82)||(42306199-42306280)
chr4 (1-83)||(55893466-55893548)
chr4 (1-82)||(20878692-20878773)
chr4 (13-93)||(38485175-38485255)
chr4 (5-82)||(41316198-41316274)
chr4 (6-82)||(55893213-55893289)
chr4 (37-81)||(20878988-20879032)
chr4 (21-63)||(12152172-12152214)
[»] chr3 (13 HSPs)
chr3 (1-90)||(5048299-5048388)
chr3 (1-82)||(14783734-14783815)
chr3 (1-82)||(33794433-33794514)
chr3 (1-85)||(31724349-31724433)
chr3 (1-81)||(40560754-40560834)
chr3 (4-82)||(2439769-2439847)
chr3 (1-83)||(20124653-20124735)
chr3 (1-82)||(5048003-5048084)
chr3 (13-82)||(14784027-14784097)
chr3 (1-73)||(2440065-2440137)
chr3 (1-82)||(40560473-40560553)
chr3 (15-83)||(31724657-31724725)
chr3 (1-81)||(33794728-33794806)
[»] scaffold0291 (2 HSPs)
scaffold0291 (1-83)||(10952-11034)
scaffold0291 (1-82)||(11350-11431)
[»] chr8 (4 HSPs)
chr8 (1-83)||(3068772-3068854)
chr8 (1-83)||(3069069-3069151)
chr8 (1-83)||(3305617-3305699)
chr8 (1-82)||(3305914-3305995)
[»] chr6 (15 HSPs)
chr6 (1-82)||(16766288-16766369)
chr6 (1-82)||(16368895-16368976)
chr6 (2-82)||(6851248-6851328)
chr6 (2-81)||(16766556-16766635)
chr6 (4-83)||(33746710-33746789)
chr6 (5-83)||(29846978-29847056)
chr6 (1-79)||(20582638-20582716)
chr6 (1-82)||(11246346-11246427)
chr6 (1-83)||(11242290-11242372)
chr6 (16-82)||(33746961-33747027)
chr6 (15-86)||(16368636-16368707)
chr6 (3-55)||(20582905-20582957)
chr6 (15-83)||(29846787-29846855)
chr6 (15-83)||(6851549-6851616)
chr6 (13-63)||(12612291-12612341)
[»] scaffold0428 (2 HSPs)
scaffold0428 (1-80)||(7770-7849)
scaffold0428 (4-80)||(7491-7567)
[»] chr2 (6 HSPs)
chr2 (2-81)||(4731715-4731794)
chr2 (1-83)||(4731978-4732060)
chr2 (1-83)||(12414132-12414214)
chr2 (1-83)||(12426192-12426274)
chr2 (15-82)||(12413837-12413904)
chr2 (15-82)||(12425897-12425964)
[»] scaffold1408 (1 HSPs)
scaffold1408 (4-80)||(1745-1821)
[»] scaffold0184 (2 HSPs)
scaffold0184 (1-81)||(7248-7328)
scaffold0184 (4-87)||(7012-7095)
[»] scaffold0032 (2 HSPs)
scaffold0032 (1-85)||(33211-33295)
scaffold0032 (1-42)||(32959-33000)
[»] scaffold0021 (1 HSPs)
scaffold0021 (13-63)||(12200-12250)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 82 - 222
Target Start/End: Complemental strand, 43118235 - 43118095
Alignment:
Q  82 ttaattttaatacattttgaattgcggaaacccttacaatagtgcattcatccttgaactctacctcttccatgcatggcttacgaagcatcacaccaaa 181  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43118235 ttaattttaatacattttgaattgtggaaacccttacaatagtgcattcatccttgaactctacctcttccatgcatggcttacgaagcatcacaccaaa 43118136  T
Q  182 cggttcatgtaatcaaattcgcgtagtacaatatcaattat 222  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43118135 cggttcatgtaatcaaattcgcgtagtacaatatcaattat 43118095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 37873497 - 37873415
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37873497 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctt 37873415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 24825639 - 24825557
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  24825639 gactgatttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacgagtgcaatatttaagcctt 24825557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 32793078 - 32793160
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  32793078 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggctatatttgcagggacgagtgcaatatttaagcctt 32793160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 37879148 - 37879226
Alignment:
Q  4 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37879148 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtacaatatttaagcct 37879226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 24825855 - 24825935
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24825855 gactgatttctgaatttttatttttcaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 24825935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 32792860 - 32792783
Alignment:
Q  4 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  32792860 tgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcc 32792783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 11324346 - 11324425
Alignment:
Q  4 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  11324346 tgatttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacgaatgcaatatttaagcctt 11324425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 9402627 - 9402563
Alignment:
Q  14 atttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaa 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9402627 atttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaa 9402563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 11324119 - 11324056
Alignment:
Q  15 tttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaa 78  Q
    ||||| ||||||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||    
T  11324119 ttttttttttacagggacgaaaacttaatcgggccatatttgcagggacgagtgcaatatttaa 11324056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31155637 - 31155718
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31155637 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 31155718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 39760504 - 39760423
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  39760504 gactaatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 39760423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 31155973 - 31155893
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||    
T  31155973 gactgatttctgaatttttattttacaaggaccaaaacttaaacgtgtcatatttgcagggacgagatcaatatttaagcc 31155893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 39761609 - 39761689
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||    
T  39761609 gactgatttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacaagtgcaatatttaagcc 39761689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31156188 - 31156269
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||||| ||||||||||||||||    
T  31156188 gactgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttgtagggacgaatgcaatatttaagcct 31156269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 31155430 - 31155368
Alignment:
Q  21 ttttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    |||||||||||| |||| ||||||||| |||||||||| |||||||| |||||||||||||||    
T  31155430 ttttacaaggacaaaaaattaaacgggccatatttgcatggacgagtacaatatttaagcctt 31155368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 52331487 - 52331398
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccttaatttta 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  52331487 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctttatttta 52331398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 7709780 - 7709700
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  7709780 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagttcaatatttaagcc 7709700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 7709997 - 7710078
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  7709997 gactgatttctgaatttttattttacaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 7710078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 52331702 - 52331783
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52331702 gactgatttctaaatttttattttacaaggatcaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 52331783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 13618399 - 13618475
Alignment:
Q  4 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagc 80  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  13618399 tgatttctgattttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgaatgcaatatttaagc 13618475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 34492525 - 34492606
Alignment:
Q  2 actgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    |||||| |||||||||||||||||||||||||||||||||||| |  |||||||||||| ||||||||||||||||||||||    
T  34492525 actgatgtctgaatttttattttacaaggaccaaaacttaaacagaccatatttgcaggaacgagtgcaatatttaagcctt 34492606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 13618582 - 13618658
Alignment:
Q  4 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagc 80  Q
    |||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  13618582 tgatttctgattttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaagc 13618658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 37646952 - 37647032
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||  |||| |||||||||||||||    
T  37646952 gactgatttttgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagaaacgaatgcaatatttaagcc 37647032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 13618322 - 13618254
Alignment:
Q  15 tttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13618322 ttttttttttacagggactaaaacttaaacgggtcatatttgcagggaagagtgcaatatttaagcctt 13618254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 34492302 - 34492237
Alignment:
Q  16 ttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    |||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  34492302 tttttttttacacggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 34492237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 37646774 - 37646740
Alignment:
Q  49 catatttgcagggacgagtgcaatatttaagcctt 83  Q
    ||||||||||||||||| |||||||||||||||||    
T  37646774 catatttgcagggacgaatgcaatatttaagcctt 37646740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 23254457 - 23254377
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23254457 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 23254377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 15874308 - 15874229
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15874308 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 15874229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 23254672 - 23254753
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  23254672 gactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 23254753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 41315979 - 41315890
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccttaatttta 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||    
T  41315979 gactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaagccttattttta 41315890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 15874523 - 15874607
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccttaa 85  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  15874523 gactgatttctgaatttttattttacaaagaccaaaacttaaacggggcatatttgcagggacgagtgcaatacttaagccttaa 15874607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38484541 - 38484460
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  38484541 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagagacgagtgcaatatttaagcct 38484460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 42305985 - 42305896
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccttaatttta 90  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  42305985 gactgatttctgaatttttattttacgaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctttatttta 42305896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 42306199 - 42306280
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||    
T  42306199 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttggagggacgagttcaatatttaagcct 42306280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 55893466 - 55893548
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  55893466 gactgatttctgaatttttatttttcaaggaccaaaacttaaacgagccatatttacagggacgagtgcaatatttaagcctt 55893548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 20878773 - 20878692
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||    
T  20878773 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggatgagtggaatgtttaagcct 20878692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 38485175 - 38485255
Alignment:
Q  13 aatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccttaattttaata 93  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  38485175 aattttttttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccattattttaata 38485255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 41316198 - 41316274
Alignment:
Q  5 gatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    |||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  41316198 gatttctgaatttt-attttacaaggaccaaaacttaaacgaaccatatttgcagggacgagtgcaatatttaagcct 41316274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 55893289 - 55893213
Alignment:
Q  6 atttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  55893289 atttctgaatttttattttacaataaccaaaacttaaacgggccatatttgcagagacgggtgcaatatttaagcct 55893213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 20878988 - 20879032
Alignment:
Q  37 acttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||    
T  20878988 acttaaacgggccatatttgcagggacgagtgtaatatttaagcc 20879032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 12152214 - 12152172
Alignment:
Q  21 ttttacaaggaccaaaacttaaacgggtcatatttgcagggac 63  Q
    ||||||| |||| |||||||||||| |||||||||||||||||    
T  12152214 ttttacagggactaaaacttaaacgagtcatatttgcagggac 12152172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 5048299 - 5048388
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccttaatttta 90  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  5048299 gactgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccttattttta 5048388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 14783815 - 14783734
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  14783815 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcct 14783734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 33794514 - 33794433
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  33794514 gactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 33794433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 31724433 - 31724349
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccttaa 85  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  31724433 gactgatttctgaatttttattttacaaggaccaaaatttaaacgggccatatttgcatggacgagtgcaatatttaagccttaa 31724349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 40560754 - 40560834
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  40560754 gactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 40560834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 2439847 - 2439769
Alignment:
Q  4 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2439847 tgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 2439769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 20124735 - 20124653
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||    
T  20124735 gactgatttctgaatttttattttacaaagaccaaaacttaaacggaccatatttacagggacgagtgcaatatttaagcctt 20124653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 5048084 - 5048003
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||| || |||||||||||||||||||||||    
T  5048084 gactgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttacaaggacgagtgcaatatttaagcct 5048003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 14784027 - 14784097
Alignment:
Q  13 aatttttatttt-acaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    |||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14784027 aatttttatttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 14784097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2440065 - 2440137
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaata 73  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||| || ||||||||||||||    
T  2440065 gactgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttacaaggacgagtgcaata 2440137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 40560553 - 40560473
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||| ||||||| |||| |||| | ||||| | |||||||||||||||| |||||||||||||||||    
T  40560553 gactgatttctgaattttt-ttttacagggactaaaattaaaacgaggcatatttgcagggacgggtgcaatatttaagcct 40560473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 31724657 - 31724725
Alignment:
Q  15 tttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    |||||| |||||  |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  31724657 tttttaatttaccgggacaaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcctt 31724725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 33794728 - 33794806
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    ||||||||||||| |||||  |||||| |||| |||| | ||||| | |||||||||||||||||||||||||||||||||    
T  33794728 gactgatttctgatttttt--tttacagggactaaaattaaaacgaggcatatttgcagggacgagtgcaatatttaagcc 33794806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11034 - 10952
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  11034 gactgatttctgaatttttattttacaaggaccaaaatttaaacgggccatatttgcagggacgagtgcaatatttaagcctt 10952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 11350 - 11431
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  11350 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcct 11431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3068854 - 3068772
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  3068854 gactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctt 3068772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 3069069 - 3069151
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  3069069 gactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctt 3069151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3305699 - 3305617
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  3305699 gactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagttcaatatttaagcctt 3305617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3305914 - 3305995
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3305914 gactgatttctaaatttttattttacaaggaagaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 3305995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 16766369 - 16766288
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16766369 gactgatttctgaatttttattttacaaagaccaaaacttaaatgggtcatatttgcagggacgagtgcaatatttaagcct 16766288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 16368895 - 16368976
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    |||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16368895 gactgatttctgaattttcattttacacggaccaaaacttaaacggatcatatttgcagggacgagtgcaatatttaagcct 16368976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 6851328 - 6851248
Alignment:
Q  2 actgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  6851328 actgatttctgaatttttattttacaaagaccaaaacttaaacggatcatatttgcatggacgagtgcaatatttaagcct 6851248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 16766556 - 16766635
Alignment:
Q  2 actgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||    
T  16766556 actgatttctgaatttttattttacaaggaccaaaacataaacgggccatatttgcagggacgattgcaatatttaagcc 16766635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 33746789 - 33746710
Alignment:
Q  4 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33746789 tgatttctgaatttttattttacatggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctt 33746710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 29846978 - 29847056
Alignment:
Q  5 gatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29846978 gatttctgaatttttattttacagagaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctt 29847056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 20582716 - 20582638
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaag 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||||||||||||    
T  20582716 gactgatttctgaatttttattttacaaggaccaaaacttaaacggactatatttgtagggacgagtgcaatatttaag 20582638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 11246346 - 11246427
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||||||| ||||||||||||||||||||||  |||||||||| | ||||||||||||||| |||||||||||||||||||    
T  11246346 gactgatttgtgaatttttattttacaaggactcaaacttaaacagatcatatttgcagggatgagtgcaatatttaagcct 11246427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 11242372 - 11242290
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | | |||||||   |||||||||||||||||||||||||    
T  11242372 gactgatttctgaatttttattttacaaggatcaaaacttaaatgagccatatttatggggacgagtgcaatatttaagcctt 11242290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 33746961 - 33747027
Alignment:
Q  16 ttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    |||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  33746961 tttttttttacaaggacgaaaacttaaacgggccatatttgcagggacgggtgcaatatttaagcct 33747027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 16368707 - 16368636
Alignment:
Q  15 tttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccttaat 86  Q
    ||||| ||||||| |||| |||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  16368707 ttttttttttacagggacgaaaacttaaacatgccatatttgcagggacgagtgcaatatttaagccttaat 16368636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 20582905 - 20582957
Alignment:
Q  3 ctgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatattt 55  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  20582905 ctgatttctaaatttttattttacaaggaccaaaacttaaacgggccatattt 20582957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 29846855 - 29846787
Alignment:
Q  15 tttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    ||||| ||||||| |||| |||||||||| |   |||||||||||||||||||||||||||||||||||    
T  29846855 ttttttttttacagggacgaaaacttaaatgacccatatttgcagggacgagtgcaatatttaagcctt 29846787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 6851549 - 6851616
Alignment:
Q  15 tttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    ||||| ||||||| | || |||||||||||| | ||||||||||| |||| ||||||||||||||||||    
T  6851549 ttttttttttacaggaacgaaaacttaaacgagccatatttgcagagacg-gtgcaatatttaagcctt 6851616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 12612291 - 12612341
Alignment:
Q  13 aatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggac 63  Q
    ||||||||||||||| |||| |||||| ||||| | |||||||||||||||    
T  12612291 aatttttattttacagggactaaaactaaaacgaggcatatttgcagggac 12612341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 7770 - 7849
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagc 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  7770 gactgatttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacgagtgcaatatttaagc 7849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 7567 - 7491
Alignment:
Q  4 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagc 80  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7567 tgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 7491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 4731794 - 4731715
Alignment:
Q  2 actgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  4731794 actgatttctgaatttttattttacaaggaccaaatcttaaacgggccatatttgcagggacgagtgcaatatttaagcc 4731715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4731978 - 4732060
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  4731978 gactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggatgagtgcaatatttaagcctt 4732060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 12414132 - 12414214
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    |||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  12414132 gactgatttctgaatttttattttacaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctt 12414214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 12426192 - 12426274
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcctt 83  Q
    |||||||||||||||||||||||||||||||  |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  12426192 gactgatttctgaatttttattttacaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctt 12426274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 12413904 - 12413837
Alignment:
Q  15 tttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||| ||||| | |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  12413904 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcct 12413837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 12425964 - 12425897
Alignment:
Q  15 tttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcct 82  Q
    ||||| ||||| | |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  12425964 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcct 12425897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 1821 - 1745
Alignment:
Q  4 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagc 80  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1821 tgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 1745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 7248 - 7328
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||    
T  7248 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgaatccaatatttaagcc 7328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 7095 - 7012
Alignment:
Q  4 tgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccttaatt 87  Q
    |||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  7095 tgatttctgaatttttattttataaggaccaaaacttaaacggaccatatttgcaggaacgagtgcaatatttaagccttaatt 7012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 33211 - 33295
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccttaa 85  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| ||||||    
T  33211 gactgatttctgaatttttattttacaaggaccaaaacataaacggaccatatttgcagggacgagtgcaatatttaaaccttaa 33295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33000 - 32959
Alignment:
Q  1 gactgatttctgaatttttattttacaaggaccaaaacttaa 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33000 gactgatttctgaatttttattttacaaggaccaaaacttaa 32959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 12250 - 12200
Alignment:
Q  13 aatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggac 63  Q
    ||||||||||||||| |||| |||||| ||||| | |||||||||||||||    
T  12250 aatttttattttacagggactaaaactaaaacgaggcatatttgcagggac 12200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University