View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_68 (Length: 215)
Name: NF1545_low_68
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 33598524 - 33598709
Alignment:
| Q |
17 |
atgtaccacttaatatccaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctctaattgtaataacagacttttcctgaaaagtta |
116 |
Q |
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| T |
33598524 |
atgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctctaattgtaataacagacttttcctgaaaagtta |
33598623 |
T |
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| Q |
117 |
gaatattggcttaaatctgatataattctcccactaaaaaattatacatcaaatcaatatgtacacgaacagtcaaatataattct |
202 |
Q |
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| T |
33598624 |
gaatattggcttaaatctgatataattctcccactcaaaaattatacatcaaatcaatatgtacacaaacagtcaaatataattct |
33598709 |
T |
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Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 47072448 - 47072525
Alignment:
| Q |
17 |
atgtaccacttaatatccaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctctaattgtaata |
94 |
Q |
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| T |
47072448 |
atgtaccacttaatatctaaggattgttgatcaagtatctatacagagaagaacggttggctgtctctaattgtaata |
47072525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 18232718 - 18232660
Alignment:
| Q |
17 |
atgtaccacttaatatccaaggattgtggatcaagtatctatacagagaagaaaggttg |
75 |
Q |
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| T |
18232718 |
atgtaccacttaaaatctaaggattgtggatcaactatctatagagagaaaaaaggttg |
18232660 |
T |
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