View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1545_low_7 (Length: 574)
Name: NF1545_low_7
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 534; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Original strand, 31185339 - 31185892
Alignment:
| Q |
18 |
accattagcactaccatatccaacagcagtgacaccatgatctagctcagttccacattctcctgtataaattccacttgagtaaaacatgaaacttgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31185339 |
accattagcactaccatatccaacagcagtgacaccatgatctagctcagttccacattctcctgtataaattccacttgagtaaaacatgaaacttgag |
31185438 |
T |
|
| Q |
118 |
tcactagcatcaatggaaactgatattggttggtttgccacagctttgagaagtgatatctcactattaaccggaactttctcatatcctgtaatcttag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31185439 |
tcactagcatcaatggaaactgatattggttggttcgccacagctttgagaagtgatttctcactattaactggaactttctcatatcctgtaatcttag |
31185538 |
T |
|
| Q |
218 |
ccacaggagtggttgttgcagtgttacaacttccatccgctgctttataagggtaattagtctcacttgtaattccaccatttttaatgataaattcaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31185539 |
ccacaggagtggttgttgcagtgttacaacttccatccgctgctttataagggtaattagtctcacttgtaattccaccatttttaatgataaattcaaa |
31185638 |
T |
|
| Q |
318 |
tccatcttccattaatcctccttcgcatccttggtcttcaccttttgtgtcacaatctactagctcttgttctgagagggagactaatttgcctgtagtt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31185639 |
tccatcttccattaatcctccttcgcatccttggtcttcaccttttgtgtcacaatctactagctcttgttctgagagggagactagtttgcctgtagtt |
31185738 |
T |
|
| Q |
418 |
atttggttgataccctcggttgcagccaccgttgaaaatgcccagcagctcccttttgtttcattttcaaaacaaaatcaacagaaagattatttattta |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31185739 |
atttggttgataccctcggttgcagccaccgttgaaaatgcccagcagctcccttttgtttcattttcaaaacaaaatcaacagaaagattatttattta |
31185838 |
T |
|
| Q |
518 |
atccaattgattaaactcaaatcaaataaaattatatagtaagaataatatacc |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31185839 |
atccaattgattaaactcaaatcaaataaaattatatagtaagaacaatatacc |
31185892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 525
Target Start/End: Original strand, 31194167 - 31194673
Alignment:
| Q |
19 |
ccattagcactaccatatccaacagcagtgacaccatgatctagctcagttccacattctcctgtataaattccacttgagtaaaacatgaaacttgagt |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31194167 |
ccattagcactaccataaccaacagcagtaacaccatggtctagctcagttccacattctcctgtataaattccacttgagtaaaacatgaaacttgagt |
31194266 |
T |
|
| Q |
119 |
cactagcatcaatggaaactgatattggttggtttgccacagctttgagaagtgatatctcactattaaccggaactttctcatatcctgtaatcttagc |
218 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31194267 |
cacttgcatcaatagaaactgatattggttggttcgccacagctttgagaagtgatatctcactattaaccggaactttctcatatcctgtaatcttagc |
31194366 |
T |
|
| Q |
219 |
cacaggagtggttgttgcagtgttacaacttccatccgctgctttataagggtaattagtctcacttgtaattccaccatttttaatgataaattcaaat |
318 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31194367 |
cacaggggcagttgttgcagtgttacaacttccatcagctgctttataagggtaattagtctcacttgtaattccaccatttttaatgataaactcaaat |
31194466 |
T |
|
| Q |
319 |
ccatcttccattaatcctccttcgcatccttggtcttcaccttttgtgtcacaatctactagctcttgttctgagagggagactaatttgcctgtagtta |
418 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
31194467 |
ccatcttccattaatcctccttcacatccttgatcttcaccttttgtgtcacaatcaactaactcttgttctgagagggagattagttttcctgtagtta |
31194566 |
T |
|
| Q |
419 |
tttggttgataccctcggttgcagccaccgttgaaaatgcccagcagctcccttttgtttcattttcaaaacaaaatcaacagaaagattatttatttaa |
518 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||| ||||| || |
|
|
| T |
31194567 |
tttggttgataccctcgattgcagccactgttgaaaatgcccagcagctcccttttgttttattttcaagacaaaattaacagaaacattaattattcaa |
31194666 |
T |
|
| Q |
519 |
tccaatt |
525 |
Q |
| |
|
| ||||| |
|
|
| T |
31194667 |
ttcaatt |
31194673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 31176535 - 31176610
Alignment:
| Q |
30 |
accatatccaacagcagtgacaccatgatctagctcagttccacattctcctgtataaattccacttgagtaaaac |
105 |
Q |
| |
|
|||||| |||||| ||| ||| |||||||| ||||||||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
31176535 |
accataaccaacaatagtaacaacatgatctgtatcagttccacattttcctgtaaaaattccacctgagtaaaac |
31176610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 461
Target Start/End: Original strand, 31176873 - 31176966
Alignment:
| Q |
368 |
cacaatctactagctcttgttctgagagggagactaatttgcctgtagttatttggttgataccctcggttgcagccaccgttgaaaatgccca |
461 |
Q |
| |
|
||||||||| || ||||||||||| || || |||| || ||||| |||||||||| ||||||||| | | |||||| |||||||||||||| |
|
|
| T |
31176873 |
cacaatctatcagttcttgttctgatagtgacactagttcacctgttgttatttggtggataccctctatggaagccacagttgaaaatgccca |
31176966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 29733305 - 29733349
Alignment:
| Q |
66 |
agttccacattctcctgtataaattccacttgagtaaaacatgaa |
110 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
29733305 |
agttccacattctcctgtaaaaatcccacttgagtaaaacttgaa |
29733349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 29746924 - 29746886
Alignment:
| Q |
66 |
agttccacattctcctgtataaattccacttgagtaaaa |
104 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
29746924 |
agttccacattctcctgtaaatattccacttgagtaaaa |
29746886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 30056369 - 30056407
Alignment:
| Q |
66 |
agttccacattctcctgtataaattccacttgagtaaaa |
104 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
30056369 |
agttccacattctcctgtaaatattccacttgagtaaaa |
30056407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 30072889 - 30072927
Alignment:
| Q |
66 |
agttccacattctcctgtataaattccacttgagtaaaa |
104 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
30072889 |
agttccacattctcctgtaaatattccacttgagtaaaa |
30072927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 29729969 - 29730013
Alignment:
| Q |
66 |
agttccacattctcctgtataaattccacttgagtaaaacatgaa |
110 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
29729969 |
agttctacattctcctgtaaaaatcccacttgagtaaaacttgaa |
29730013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 8899073 - 8899027
Alignment:
| Q |
346 |
ccttggtcttcaccttttgtgtcacaatctactagctcttgttctga |
392 |
Q |
| |
|
||||||||| ||||||||||||||||||| || || ||||||||||| |
|
|
| T |
8899073 |
ccttggtctacaccttttgtgtcacaatcaacaagttcttgttctga |
8899027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 31727231 - 31727185
Alignment:
| Q |
346 |
ccttggtcttcaccttttgtgtcacaatctactagctcttgttctga |
392 |
Q |
| |
|
|||||||||||||| |||||||||||||| || || ||||||||||| |
|
|
| T |
31727231 |
ccttggtcttcaccatttgtgtcacaatcaacaagttcttgttctga |
31727185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 461
Target Start/End: Original strand, 35228537 - 35228630
Alignment:
| Q |
368 |
cacaatctactagctcttgttctgagagggagactaatttgcctgtagttatttggttgataccctcggttgcagccaccgttgaaaatgccca |
461 |
Q |
| |
|
||||||| ||||||||||| || ||||| || |||||| | ||||| |||||||| | ||||| || |||||||||| |||| ||||||||| |
|
|
| T |
35228537 |
cacaatccactagctcttgctcagagagtgatactaatcttcctgtggttatttgatgaataccttctattgcagccacagttgcaaatgccca |
35228630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University