View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_72 (Length: 207)
Name: NF1545_low_72
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_72 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 15049384 - 15049590
Alignment:
| Q |
1 |
ttattatctaactccctttctctcttctcactgtatcggccgctgcctaacttcttatctttgtcgccccttctttccaaattcctttggttcacaatgt |
100 |
Q |
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| T |
15049384 |
ttattatctaacaccctttctctcttctcactgtatcggccgctgcctaaattcttatctctgtcgccccttctttccaaattcctttggttcacaatgt |
15049483 |
T |
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| Q |
101 |
aaacggccgtggtggctgaaggtgcgaagatggaacaaccatccgcatcacctctagtcactgttctctcggcgctgatttcgcagaaagaatgtgttct |
200 |
Q |
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| T |
15049484 |
aaacggcggtggtggctgaaggtgcgaagatggaacaaccatccgcatcacctctagtcactgttctctcggcgctgatttcgcagaaagaatgtgttct |
15049583 |
T |
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| Q |
201 |
tggtgcg |
207 |
Q |
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| T |
15049584 |
tggtgcg |
15049590 |
T |
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Target: chr1 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 26841348 - 26841535
Alignment:
| Q |
15 |
cctttctctcttctcactgtatcggccgctgcctaacttcttatctttgtcgccccttctttccaaattcctttggttcacaatgtaaacggccgtggtg |
114 |
Q |
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| T |
26841348 |
cctttctctcttctcactatatcggccgccatctaacttcttacccccgctgtcccttctttccaaattcttttggttcataatgtaaacgg---tggtg |
26841444 |
T |
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| Q |
115 |
gctgaaggtgcgaagatggaacaaccatccgcatcacctctagtcactgttctctcggcgctgatttcgcagaaagaatgtgttcttggtg |
205 |
Q |
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| T |
26841445 |
gctgatggtgcgaatatggaacagccatccgcatcaccactggtcactattctctcggcgttgatttcgtcgagaggatgggttcttggtg |
26841535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 1654282 - 1654178
Alignment:
| Q |
47 |
ctaacttcttatctttgtcgccccttctttccaaattcctttggttcacaatgtaaacggccgtggtggctgaaggtgcgaagatggaacaaccatccgc |
146 |
Q |
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| T |
1654282 |
ctaactccttatctctgccgccccttctttccaaatttctttggttctcaatgtaaacggc---ggtgggtggtggtgcgaagatggaa-aaccatccgc |
1654187 |
T |
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| Q |
147 |
atcacctct |
155 |
Q |
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| T |
1654186 |
atcacctct |
1654178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 22376 - 22302
Alignment:
| Q |
110 |
tggtggctgaaggtgcgaagatggaacaaccatccgcatcacctctagtcactgttctctcggcgctgatttcgc |
184 |
Q |
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| T |
22376 |
tggtggctggtggtgcgaagatggaacatccatccgcatcacctccagtccttgttctcttggcggtgatttcgc |
22302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 5745492 - 5745566
Alignment:
| Q |
110 |
tggtggctgaaggtgcgaagatggaacaaccatccgcatcacctctagtcactgttctctcggcgctgatttcgc |
184 |
Q |
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| T |
5745492 |
tggtggctggtggtgcgaagatggaacatccatccgcatcacctccggtccttgttctcttggcggtgatttcgc |
5745566 |
T |
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