View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_8 (Length: 562)
Name: NF1545_low_8
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 40102170 - 40102468
Alignment:
| Q |
1 |
catagatacacttactttagaaaggggattagatttgagaagatcaatgataaaaaagggtacttttgctttgactctaattgactaaagttaatttctt |
100 |
Q |
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| T |
40102170 |
catagatacacttactttagaaaggggattaaatttgagaagatcaatgataaaaaagggtacttttgctttgactctaattgactaaagttaatttctt |
40102269 |
T |
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| Q |
101 |
gtttcatatggttgtgaagggcactgtaatttattaaatttttgtgttgctgattgctttaactttttcagttattctagcaagaaggcctatggacagt |
200 |
Q |
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| T |
40102270 |
gtttcatatggttgtgaagagcactgtaatttattaaatttttgtgttgcttattgctttaactttttcagttattctagcaagaaggcctatggacagt |
40102369 |
T |
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| Q |
201 |
ccaagttagccaacatattacatgcaaatgaactctctcgtcgcctgcaggtaatccaacatattacaagtatctttgagtcagagccatcgattaagg |
299 |
Q |
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| T |
40102370 |
ccaagttagccaacatattacatgcaaatgaactctctcgtcgcctgcaggtaacccaacatattacaagtatctttgagtcagagccatcgattaagg |
40102468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 384 - 546
Target Start/End: Original strand, 40102553 - 40102715
Alignment:
| Q |
384 |
ccttaaccggtaattttgtgaaaagaggaccctctgctataccaatcatcatatcctaactagtggactagttatggagcatgtatattaatttggtgtc |
483 |
Q |
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| T |
40102553 |
ccttaaccggtaattttgtgaaaagaggaccctctgctataccaatcatcatatcctaattagtggactagttatggagcatgtatattaatttggtgtc |
40102652 |
T |
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| Q |
484 |
tcacatttgtcaacaggaagagggagtgaacatcacagtcaactctgtccacccaggagtgat |
546 |
Q |
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| T |
40102653 |
tcacatttgtcaacaggaagagggagtgaacatcacagtcaactctgtccacccaggagtgat |
40102715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 29518364 - 29518272
Alignment:
| Q |
164 |
tttttcagttattctagcaagaaggcctatggacagtccaagttagccaacatattacatgcaaatgaactctctcgtcgcctgcaggtaatc |
256 |
Q |
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||||||||||| ||| ||||||||| |||||||||||||||||||| |||||| |||| |||||||| || ||||||||| || |||||||| |
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| T |
29518364 |
tttttcagttactctgacaagaaggcttatggacagtccaagttagctaacatactacacgcaaatgagctttctcgtcgcttgaaggtaatc |
29518272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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