View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15460_low_2 (Length: 380)
Name: NF15460_low_2
Description: NF15460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15460_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 15 - 362
Target Start/End: Complemental strand, 5419374 - 5419028
Alignment:
| Q |
15 |
caaaggtaacaaagtaaaaaatggggccaagatcctaaaattttaatcaagtccctaaacttctaaatgatttttaattagatccttacaaacttataaa |
114 |
Q |
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| T |
5419374 |
caaaggtaacaaagcaaaaaatagggccaagatcctaaacttttaatcaagtccctaaacttctaaatgatttttaattagatccttacaaacttataaa |
5419275 |
T |
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| Q |
115 |
taatttgaattagatacttcaacttgtaaataaatttatctttaggttctacttctaattacaaattactaaaattcagtgatctaatttaattagtata |
214 |
Q |
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| T |
5419274 |
taatttgaattagatacttcaacttgtaaataaatttatctttaggttctacttctaattacaaattactaaaattcagtgatctaatttaattagtata |
5419175 |
T |
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| Q |
215 |
attttttgtagttcaatattctatttaaaaatcttatttagagtagtaaattatnnnnnnngaagaagaaggtattggtacaaataaattacatcaatca |
314 |
Q |
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| T |
5419174 |
attttttgtagttcaatattctatttaaaaatcttatttagagtaataaattataaaaaaa-aaaaagaaggtattggtacaaataaattacatcaatca |
5419076 |
T |
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| Q |
315 |
aattaaataatcttttaatcggtgtacaaaaatcttaaactattaata |
362 |
Q |
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| T |
5419075 |
aattaaataatcttttaatcggtgtacaaaaatcttaaactatgaata |
5419028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 9199227 - 9199271
Alignment:
| Q |
51 |
aaaattttaatcaagtccctaaacttctaaatgatttttaattag |
95 |
Q |
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| T |
9199227 |
aaaattttaatcaagtctctaaacttctaaatcatatataattag |
9199271 |
T |
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