View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15460_low_5 (Length: 266)
Name: NF15460_low_5
Description: NF15460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15460_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 32756011 - 32756252
Alignment:
| Q |
19 |
aagaaaagtaaaaataagcaaaatattatggaacgaactttagaaagtaaaactaacaattattaatttaaactcaaggnnnnnnn--tcattgatttta |
116 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
32756011 |
aagaaaaggaaaaataagccaaatactatggaacaaactttagtaagtaaaactaacaattattaatttaaactcaaggaaataaaaatcattggtttta |
32756110 |
T |
|
| Q |
117 |
cctggaagaagtttgtcatgattagctacacacagaaacagcgagagatgattgcaaacgtcacatccttgtggataaattaaaatatacctgccaataa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32756111 |
cctggaagaagtttgtcatgattagctacacacagaaacagcgagagatgattgcaaacgtcacatccttgtggataaattaaaatatacctgccaataa |
32756210 |
T |
|
| Q |
217 |
ccaaagaaagattctgttgaaaatcaaaaaataatttggcct |
258 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
32756211 |
ccaaagaaagattctgttgaaaatcaaaacataatttggcct |
32756252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 32766393 - 32766628
Alignment:
| Q |
19 |
aagaaaagtaaaaataagcaaaatattatggaacgaactttagaaagtaaaactaacaattattaatttaaactcaaggnnnnnnntcattgattttacc |
118 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32766393 |
aagaaaaggaaaaataagccaaatactatggaacaaactttagtaagtaaaactaacaattattaatttaaactcaaggaaaaaaatcattgattttacc |
32766492 |
T |
|
| Q |
119 |
tggaagaagtttgtcatgattagctacacacagaaacagcgagagatgattgcaaacgtcacatccttgtggataaattaaaatatacctgccaataacc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32766493 |
tggaagaagtttgtcatgattagctacacacagaaatagtgagagatgatcgctaacgtcacatccttgtggataaattaaaatatacctgccaataacc |
32766592 |
T |
|
| Q |
219 |
aaagaaagattctgttgaaaatcaaaaaataatttg |
254 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
32766593 |
aaagaaagattctgtcgaaaatcaaaacataatttg |
32766628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 16772405 - 16772309
Alignment:
| Q |
116 |
acctggaagaagtttgtcatgattagctacacacagaaacagcgagagatgattgcaaacgtcacatccttgtggataaattaaaatatacctgcca |
212 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
16772405 |
acctggaagaagtttgtcatgattagcaacacaaagaaacagagagagatgattgcatacatcacaaccttgtgggtaaattaaaatatacctgcca |
16772309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University