View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15461_high_1 (Length: 978)
Name: NF15461_high_1
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15461_high_1 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold0190 (1 HSPs) |
| | |
|
| [»] scaffold0130 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 8 - 562
Target Start/End: Complemental strand, 7606402 - 7605847
Alignment:
| Q |
8 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgt |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606402 |
gagatgaacaaattaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgt |
7606303 |
T |
|
| Q |
108 |
ccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606302 |
ccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataa |
7606203 |
T |
|
| Q |
208 |
aataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606202 |
aataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgac |
7606103 |
T |
|
| Q |
308 |
ccacatttcatggatgtcgtgaccaactaatgcagcttcaaggtttgtaaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttggat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606102 |
ccacatttcatggatgtcgtgaccaactaatgcggcttcaaggtttgtaaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttggat |
7606003 |
T |
|
| Q |
408 |
ataactatgaataactttatgacattcaagtctcttttcagtatattttgataaagaagaatgttagggtcacaccctctaacacactccaatggaaact |
507 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7606002 |
ataactatgaataagtgtatgacgttcaagtctctttttagtatattttgataaagaagaatgttagggtcacaccctctaacacactccagtggaaact |
7605903 |
T |
|
| Q |
508 |
tgccatctcattcac-nnnnnnnaagttacttacctgctgaccagttacacaagtt |
562 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7605902 |
tgccatctcattcacttttttttaagttacttacctgctgaccagttacacaagtt |
7605847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 294; E-Value: 1e-164
Query Start/End: Original strand, 648 - 978
Target Start/End: Complemental strand, 7605761 - 7605431
Alignment:
| Q |
648 |
ttcaacgttgctgcctcctccttcaaatcttgcttccgatctgttgtatctatcacactctcttgtggggttccatctctagttttacttgagtttcatt |
747 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7605761 |
ttcaacgttgctgcctcctccttcaaatcttgcttccgatctgttgtatctatcacactctcttgtggggttccatctctagttttacttgagtttcatt |
7605662 |
T |
|
| Q |
748 |
tttgttgcnnnnnnnccaaatataaattgtttctcaatattgattctaagcctttggtttctattgcacctacatgttgtcatctacaattgaattctct |
847 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7605661 |
tttgttgctttttttccaaatataaattgtttctcaatattgattctaagcctttggtttctattgcacctacatgttgtcatctacaattgaattctct |
7605562 |
T |
|
| Q |
848 |
tttgctatgtattcaaaagtttgtataaacattcatttggtaattcgtttttatttcaattgaaatttggcaatattatcaatgacattatttgggagaa |
947 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7605561 |
tttgctatgtattcaaaaatttgtataaacattcatttggtaattcgtttttatttaaattgaaatttggcaatgttatcaatgacattatttgggagaa |
7605462 |
T |
|
| Q |
948 |
tacgatttagatgtagatgtctttttccctc |
978 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
|
|
| T |
7605461 |
tacgatttagatatagatgtctttttccctc |
7605431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 7637233 - 7636895
Alignment:
| Q |
8 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctag---ca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||||| || |
|
|
| T |
7637233 |
gagatgaacaagttaattgcttcacacactgatgagaagttgaagaatcattacgagtcttggttaagaaatccaagcttttttaggcttgctaagaaca |
7637134 |
T |
|
| Q |
105 |
tgtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggata |
204 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
7637133 |
tggtaaaaaataatttcatatccattagtagttctccatggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggata |
7637034 |
T |
|
| Q |
205 |
taaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagt |
304 |
Q |
| |
|
||||||||||||| || | | |||||||| |||||||||||||||||||| ||||||||||| ||||||||| || ||||||||| |||||||| | |
|
|
| T |
7637033 |
taaaataaatggacttattacggtatttgccggaatagaagaaggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaat |
7636934 |
T |
|
| Q |
305 |
gacccacatttcatggatgtcgtgaccaactaatgcagc |
343 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
7636933 |
gaccccaatttcatggatgttgtgtccaactaatgcagc |
7636895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 8 - 341
Target Start/End: Complemental strand, 7615416 - 7615083
Alignment:
| Q |
8 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgt |
107 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||| |||| |
|
|
| T |
7615416 |
gagatgaacaagttaattgtttcacacactgatgagaagttgaagaatcactacgagtcttggttaagaaatccaagctttgctaggtatcctaacatgg |
7615317 |
T |
|
| Q |
108 |
ccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataa |
207 |
Q |
| |
|
| || |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| || |||||||| ||| | |||||||||||||||||||| |
|
|
| T |
7615316 |
caaaaaataatttcatagccattagcagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatataa |
7615217 |
T |
|
| Q |
208 |
aataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgac |
307 |
Q |
| |
|
| ||||||| || | | || |||||||||||||||||||||||||| || |||||||| |||||| | | || |||||||||||||||||| |||| |
|
|
| T |
7615216 |
aggaaatggacttattacggtttttgctggaatagaagaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgac |
7615117 |
T |
|
| Q |
308 |
ccacatttcatggatgtcgtgaccaactaatgca |
341 |
Q |
| |
|
|| || ||||||||||| | | |||||||||||| |
|
|
| T |
7615116 |
cctcaattcatggatgttgcgtccaactaatgca |
7615083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 7656092 - 7656446
Alignment:
| Q |
10 |
gatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtcc |
109 |
Q |
| |
|
|||||| ||||||||||||| ||| || |||| || || |||||| | |||||||| ||||| |||||||||| |||| ||||| ||| |||| || | |
|
|
| T |
7656092 |
gatgaataagttaattgctttgcactcgaatgaaaaattaaagaatgattatgagtcatggttgagaaatccaaactttattaggcttgatagcttgagc |
7656191 |
T |
|
| Q |
110 |
aataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaa |
209 |
Q |
| |
|
| ||| ||||| | ||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||| |||||| |
|
|
| T |
7656192 |
actaagaattttttggccattagcagttctccaaagtttgatgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaa |
7656291 |
T |
|
| Q |
210 |
taaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgaccc |
309 |
Q |
| |
|
||||||||| || || ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
7656292 |
caaatggaatggtttgtgcctttgctggaatagaagaagctagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcc |
7656391 |
T |
|
| Q |
310 |
acatttcatggatgtcgtgaccaactaatgcagcttcaaggtttgtaaaatcgatttg |
367 |
Q |
| |
|
| ||||||||| | || ||||||||||||| ||||| |||| ||| | |||||| |
|
|
| T |
7656392 |
tgagttcatggatatggt---caactaatgcagcgtcaagatttgaaaacttgatttg |
7656446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 193 - 341
Target Start/End: Complemental strand, 7628669 - 7628521
Alignment:
| Q |
193 |
tcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggag |
292 |
Q |
| |
|
|||||||||||||||||| || ||| |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||| |
|
|
| T |
7628669 |
tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggag |
7628570 |
T |
|
| Q |
293 |
gcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgca |
341 |
Q |
| |
|
|||||||||| |||||| || || ||||||| ||| |||||||||||| |
|
|
| T |
7628569 |
gcaatgggaaatgaccctcaatttgtggatgttgtgtccaactaatgca |
7628521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 7633556 - 7633443
Alignment:
| Q |
8 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggtta---agaaatccaagctttgttagggttgctagca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
7633556 |
gagatgaacaagttaattgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccaggctttgttagggttgctagca |
7633457 |
T |
|
| Q |
105 |
tgtccaataataat |
118 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
7633456 |
tgaccaataataat |
7633443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 7628787 - 7628708
Alignment:
| Q |
8 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctt |
87 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
7628787 |
gagatgaacaagttaattgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctt |
7628708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 703 - 754
Target Start/End: Original strand, 3620686 - 3620737
Alignment:
| Q |
703 |
cactctcttgtggggttccatctctagttttacttgagtttcatttttgttg |
754 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
3620686 |
cactttcttatggggttccatctctagtttttcttgggtttcatttttgttg |
3620737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 869 - 920
Target Start/End: Original strand, 3620861 - 3620912
Alignment:
| Q |
869 |
tgtataaacattcatttggtaattcgtttttatttcaattgaaatttggcaa |
920 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||| |||||| |
|
|
| T |
3620861 |
tgtataaacattcatttggtaattgttttagatttcaattgaaatctggcaa |
3620912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 165
Target Start/End: Complemental strand, 39097738 - 39097703
Alignment:
| Q |
130 |
tagtagttctccatggtttgatgtttatggtaatga |
165 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39097738 |
tagtagttctccaaggtttgatgtttatggtaatga |
39097703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 39088060 - 39088014
Alignment:
| Q |
131 |
agtagttctccatggtttgatgtttatggtaatgatttcggatgggg |
177 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| || ||||| |
|
|
| T |
39088060 |
agtagttctccaaggtttgatgtttatgataatgattttggttgggg |
39088014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 56 - 494
Target Start/End: Original strand, 8941738 - 8942175
Alignment:
| Q |
56 |
cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8941738 |
cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcttatccattagtagttctccatggtttgatgttt |
8941837 |
T |
|
| Q |
156 |
atggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtat |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8941838 |
atggtaatgatttcggatggggaaaacctatagcagt-cgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtat |
8941936 |
T |
|
| Q |
256 |
tgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgcagcttcaaggtttgt |
355 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8941937 |
tgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaagtgacccacgtttcatggatgtcgtgaccaaataatgcagcttcaaggtttgt |
8942036 |
T |
|
| Q |
356 |
aaaatcgatttgttagcatatttgtccaaatgcttaaatttgtattttggatataactatgaataactttatgacattcaagtctcttttcagtatattt |
455 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8942037 |
aaaatcgatttgttagcatatttgtccagatgcttaaatttgtattttggatataactatgaataactttatgatgttcaagtctcttttcagtatattt |
8942136 |
T |
|
| Q |
456 |
tgataaagaagaatgttagggtcacaccctctaacacac |
494 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
8942137 |
tgataaagatgaatgctacggtcacaccctctaacacac |
8942175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 664 - 978
Target Start/End: Original strand, 8942298 - 8942611
Alignment:
| Q |
664 |
cctccttcaaatcttgcttccgatctgttgtatctatcacactctcttgtggggttccatctctagttttacttgagtttcatttttgttgcnnnnnnnc |
763 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
8942298 |
cctccttcaaatcttgcttccgatctgttgtatctatcacactctcttgtggggttccatctctagttttacttgcgtttcatttttgttg-tttttttc |
8942396 |
T |
|
| Q |
764 |
caaatataaattgtttctcaatattgattctaagcctttggtttctattgcacctacatgttgtcatctacaattgaattctcttttgctatgtattcaa |
863 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8942397 |
ctgatctaaattgtttctcaatattgattctaagccttgggtttctattgcacctacatgctgtcatctacaattgaattctcttttgctatgtattcag |
8942496 |
T |
|
| Q |
864 |
aagtttgtataaacattcatttggtaattcgtttttatttcaattgaaatttggcaatattatcaatgacattatttgggagaatacgatttagatgtag |
963 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||| ||| |
|
|
| T |
8942497 |
aaatttgtataaacattcatttggtaattcgtttttatttcaattgaaatttggcaatgttatcaatggcattatttggaagaataagatttagatatag |
8942596 |
T |
|
| Q |
964 |
atgtctttttccctc |
978 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8942597 |
atgtctttttccctc |
8942611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 8936054 - 8936378
Alignment:
| Q |
8 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgt |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |
|
|
| T |
8936054 |
gagatgaacaagttaattgctttacacactgatgagaagttgaagaatcactatgagtcttggttaagaaatccaagcttt---ag------taacatgc |
8936144 |
T |
|
| Q |
108 |
ccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataa |
207 |
Q |
| |
|
| || || ||||||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||| |||| |||||||||| |
|
|
| T |
8936145 |
caaaaaagaatttcatagccattagcagttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatataa |
8936244 |
T |
|
| Q |
208 |
aataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgac |
307 |
Q |
| |
|
| ||||||| || | | |||||||| |||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||| |||| |
|
|
| T |
8936245 |
agcaaatggacttattacagtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgac |
8936344 |
T |
|
| Q |
308 |
ccacatttcatggatgtcgtgaccaactaatgca |
341 |
Q |
| |
|
|| || ||||||||||| | | |||||||||||| |
|
|
| T |
8936345 |
cctcaattcatggatgttgcgtccaactaatgca |
8936378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 8913546 - 8913877
Alignment:
| Q |
8 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctag---ca |
104 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
8913546 |
gagatgaacaagttaattgcttcacacgctgacgagaagttgaagaatcattacgagtcttggttaagaaatccaagctttgttaggcttgctaagaaca |
8913645 |
T |
|
| Q |
105 |
tgtccaataataatttcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggata |
204 |
Q |
| |
|
|| || | ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||| | ||||||||||||||||| |
|
|
| T |
8913646 |
tggtaaaaactaatttcatatccattagtagttctccatagtttgatgtttatggtaatgat-------ggggaaagcctgtggcagttcgtagtggata |
8913738 |
T |
|
| Q |
205 |
taaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagt |
304 |
Q |
| |
|
||||||||||||| || | | ||||||| |||||||||||||||| ||| ||||||||||| ||||||||| || ||||||||| |||||||| | |
|
|
| T |
8913739 |
taaaataaatggacttattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaat |
8913838 |
T |
|
| Q |
305 |
gacccacatttcatggatgtcgtgaccaactaatgcagc |
343 |
Q |
| |
|
||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
8913839 |
gaccccaatttcatggatgttgtgtccaactaatgcagc |
8913877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 8919071 - 8919184
Alignment:
| Q |
8 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggtt---aagaaatccaagctttgttagggttgctagca |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
8919071 |
gagatgaacaaattaattgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccagactttgttagggttgctagca |
8919170 |
T |
|
| Q |
105 |
tgtccaataataat |
118 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
8919171 |
tgaccaataataat |
8919184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 8938830 - 8938884
Alignment:
| Q |
8 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatg |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8938830 |
gagatgaacaagttaattgcttcacacacggatgagaagttgaagaatcactatg |
8938884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 460 - 518
Target Start/End: Complemental strand, 40670206 - 40670148
Alignment:
| Q |
460 |
aaagaagaatgttagggtcacaccctctaacacactccaatggaaacttgccatctcat |
518 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
40670206 |
aaagaggaatgatagggtcacaccctctaacacactcaaattataacttgccatctcat |
40670148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 466 - 500
Target Start/End: Complemental strand, 32779876 - 32779842
Alignment:
| Q |
466 |
gaatgttagggtcacaccctctaacacactccaat |
500 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32779876 |
gaatgctagggtcacaccctctaacacactccaat |
32779842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 1e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 770 - 978
Target Start/End: Original strand, 38714859 - 38715066
Alignment:
| Q |
770 |
taaattgtttctcaatattgattctaagcctttggtttctattgcacctacatgttgtcatctacaattgaattctcttttgctatgtattcaaaagttt |
869 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | ||||||||||||||||||| || ||||||| |||||||| |||||||||||||||||| || ||| |
|
|
| T |
38714859 |
taaattgtttttcaatattgattctaagcctg-gatttctattgcacctacatgctgccatctacgattgaattttcttttgctatgtattcagaaattt |
38714957 |
T |
|
| Q |
870 |
gtataaacattcatttggtaattcgtttttatttcaattgaaatttggcaatattatcaatgacattatttgggagaatacgatttagatgtagatgtct |
969 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38714958 |
gtataaacattcatttggtaattcgtttttatttcaattgaaatttggcaatattatcaatggcattatttgggagaatacgatttagatatagatgtct |
38715057 |
T |
|
| Q |
970 |
ttttccctc |
978 |
Q |
| |
|
|||| |||| |
|
|
| T |
38715058 |
tttttcctc |
38715066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 700 - 755
Target Start/End: Original strand, 38714774 - 38714829
Alignment:
| Q |
700 |
tcacactctcttgtggggttccatctctagttttacttgagtttcatttttgttgc |
755 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
38714774 |
tcacactctcttgtggggttctatctttagttttacttgagtttcatttttgttgc |
38714829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 466 - 497
Target Start/End: Complemental strand, 32909769 - 32909738
Alignment:
| Q |
466 |
gaatgttagggtcacaccctctaacacactcc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
32909769 |
gaatgttagggtcacaccctctaacacactcc |
32909738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 460 - 494
Target Start/End: Original strand, 32909295 - 32909329
Alignment:
| Q |
460 |
aaagaagaatgttagggtcacaccctctaacacac |
494 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32909295 |
aaagatgaatgttagggtcacaccctctaacacac |
32909329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 5e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 143 - 324
Target Start/End: Original strand, 40147453 - 40147634
Alignment:
| Q |
143 |
tggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatag |
242 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||| | |||||||| |||||| ||||||||| |||||| | | |||||||||||||| || |
|
|
| T |
40147453 |
tggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgtatttgctggaaaag |
40147552 |
T |
|
| Q |
243 |
aagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgt |
324 |
Q |
| |
|
|||||||||| || ||| ||||||| ||||||||| ||||| |||||||||||||||||| ||||| | ||||||||||| |
|
|
| T |
40147553 |
aagaaggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgt |
40147634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 143 - 302
Target Start/End: Complemental strand, 8102486 - 8102327
Alignment:
| Q |
143 |
tggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatag |
242 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||||||||||| | |||||||| |||||| ||||| || |||| | | ||||||||||||||||| |
|
|
| T |
8102486 |
tggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatag |
8102387 |
T |
|
| Q |
243 |
aagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaa |
302 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
8102386 |
aagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa |
8102327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 466 - 500
Target Start/End: Original strand, 46556416 - 46556450
Alignment:
| Q |
466 |
gaatgttagggtcacaccctctaacacactccaat |
500 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
46556416 |
gaatgttaggatcacaccctctaacacactccaat |
46556450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 134 - 338
Target Start/End: Complemental strand, 6500539 - 6500335
Alignment:
| Q |
134 |
agttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttg |
233 |
Q |
| |
|
||||| || ||||||||| |||||||||||||||| |||||||| ||||| | ||| |||| |||| | |||||||| |||| || || | |||||||| |
|
|
| T |
6500539 |
agttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtatttg |
6500440 |
T |
|
| Q |
234 |
ctggaatagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaa |
333 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||||| ||||||||||||||| |||||| |||||| | |||||| |||||||||||| ||| |||| |
|
|
| T |
6500439 |
ctggaaaagaataaggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttcatggatgctgtgtccaa |
6500340 |
T |
|
| Q |
334 |
ctaat |
338 |
Q |
| |
|
||||| |
|
|
| T |
6500339 |
ctaat |
6500335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 11968861 - 11968807
Alignment:
| Q |
240 |
tagaagaaggtagtattgaccttcaagtatgtcttccttacaaggttttggaggc |
294 |
Q |
| |
|
|||||||||||||||| ||| || |||| ||||||||||||||| |||||||||| |
|
|
| T |
11968861 |
tagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttggaggc |
11968807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 4501 - 4452
Alignment:
| Q |
135 |
gttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct |
184 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
4501 |
gttctccttggtttgatgtttatggtaatgattttggttggggaaaacct |
4452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 15745016 - 15745070
Alignment:
| Q |
130 |
tagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct |
184 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
15745016 |
tagtagttcaccctggtttgatgtttatggcaatgattttggttggggaaaacct |
15745070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 467 - 500
Target Start/End: Complemental strand, 27710087 - 27710054
Alignment:
| Q |
467 |
aatgttagggtcacaccctctaacacactccaat |
500 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
27710087 |
aatgctagggtcacaccctctaacacactccaat |
27710054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 463 - 500
Target Start/End: Complemental strand, 25290 - 25253
Alignment:
| Q |
463 |
gaagaatgttagggtcacaccctctaacacactccaat |
500 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
25290 |
gaagaatgctagggtcacaccctctaacacattccaat |
25253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 467 - 500
Target Start/End: Complemental strand, 43059472 - 43059439
Alignment:
| Q |
467 |
aatgttagggtcacaccctctaacacactccaat |
500 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
43059472 |
aatgttagggtcacaccctccaacacactccaat |
43059439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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