View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15461_high_10 (Length: 346)
Name: NF15461_high_10
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15461_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 172 - 330
Target Start/End: Complemental strand, 7605280 - 7605122
Alignment:
| Q |
172 |
ggttctttaggtaaatggtaaataacttnnnnnnngtgaatgatatgataagtttccattgaagtgtgttaaaggatgtggcagaggatgtgaccttaac |
271 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
7605280 |
ggttctttaggtaaatggtaaataacttaaaaaaagtgaatgatatgataagtttccattggagtgtgttaaagggtgtggcagagggtgtgaccttaac |
7605181 |
T |
|
| Q |
272 |
attcctctctttgataagatgcaagtggtggtttcttttgttgtgaacgaagttgtatt |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7605180 |
attcctctctttgataagatgcaagtggtggtttcttttgttgtgaacgaagttgtatt |
7605122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 7605448 - 7605338
Alignment:
| Q |
4 |
tagatgtctttttccctcagaagtttgtaaattgtgtttgtcaattggggttaaatcttccatcttaagagtggaggagttttccaaaacgtcaaatttg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7605448 |
tagatgtctttttccctcagaagtttgtaaattgtgtttgtcaattggggttaaatcttccatcttaagagtggaggagttttccaaaacgtcaaatttg |
7605349 |
T |
|
| Q |
104 |
ggttaaatctt |
114 |
Q |
| |
|
||||||||||| |
|
|
| T |
7605348 |
ggttaaatctt |
7605338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 8942594 - 8942702
Alignment:
| Q |
4 |
tagatgtctttttccctcagaagtttgtaaattgtgtttgtcaattggggttaaatcttccatcttaagagtggaggagttttccaaaacgtcaaatttg |
103 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||| |
|
|
| T |
8942594 |
tagatgtctttttccctcaaaagtttgtaatttgtgtttgtcaattggggttaaatcttccattttaagagt---ggagttttccagaatgtcaaatttg |
8942690 |
T |
|
| Q |
104 |
ggttaaatcttc |
115 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8942691 |
ggttaaatcttc |
8942702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 207 - 330
Target Start/End: Original strand, 8942803 - 8942927
Alignment:
| Q |
207 |
gtgaatgatatgataagtttccattgaagtgtgttaaaggatgtggcagaggatgtgaccttaacattcctctctttgataagatgcaagtggtggtttc |
306 |
Q |
| |
|
|||||||| ||| ||||||||||||||| |||| ||||| |||| |||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8942803 |
gtgaatgacatggtaagtttccattgaaatgtgccaaagggtgtgtcagagggtgtggccttagcattcctctctttgataagatgcaagtggtggtttc |
8942902 |
T |
|
| Q |
307 |
-ttttgttgtgaacgaagttgtatt |
330 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
8942903 |
tttttgttgtgcacgaagttgtatt |
8942927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 38715049 - 38715157
Alignment:
| Q |
4 |
tagatgtctttttccctcagaagtttgtaaattgtgtttgtcaattggggttaaatcttccatcttaagagtggaggagttttccaaaacgtcaaatttg |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| |||||| |||| |
|
|
| T |
38715049 |
tagatgtcttttttcctcagaagtttgtaaattgtgtttgtcaattggagttaaatcttccatcgtaagagt---ggagttttccaatacgtcatattta |
38715145 |
T |
|
| Q |
104 |
ggttaaatcttc |
115 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38715146 |
ggttaaatcttc |
38715157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 38715209 - 38715303
Alignment:
| Q |
172 |
ggttctttaggtaaatggtaaataacttnnnnnnngtgaatgatatgataagtttccattgaagtgtgttaaaggatgtggcagaggatgtgacc |
266 |
Q |
| |
|
|||||||||||| | |||||||||||| |||||||||||| ||||||| |||| ||||||||||||| |||| | |||| ||||||| |
|
|
| T |
38715209 |
ggttctttaggttagaggtaaataacttaaaaaaagtgaatgatatggtaagttttcattagagtgtgttaaagggtgtgtcggagggtgtgacc |
38715303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University