View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15461_high_18 (Length: 237)
Name: NF15461_high_18
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15461_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 96 - 235
Target Start/End: Original strand, 24483896 - 24484036
Alignment:
| Q |
96 |
aatcattccacattgttgtaaaa-gagatcaaaaaattatgtgtttactccctataccacaccttataatcaaccaagtgcaagttgcttcaaaggtggt |
194 |
Q |
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| T |
24483896 |
aatcattccacattgttgtaaaaagagatcaaacaattatgtgtttactccctataccacaccttataatcaacaaagtgcaagttatttcaaaggtagt |
24483995 |
T |
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| Q |
195 |
gaactcatatcatgggcacaagatccaacaaatgcggtttc |
235 |
Q |
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| T |
24483996 |
gaactcatatcatgggcacaagatccaacaaatgcggtttc |
24484036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24483303 - 24483399
Alignment:
| Q |
1 |
tggtcattatgatagagatgggcaaagaaagagaaaatatgggccatggtgggaagctaggttactaaacaaggagatcgtttgaaatttaaagaaa |
97 |
Q |
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| T |
24483303 |
tggtcattatgatagagatgggaaaagaaagagaaaatatgggccatggtgggaagctagtttactaaacaaggagattgtttaaaatttaaagaaa |
24483399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 24487224 - 24487453
Alignment:
| Q |
1 |
tggtcattatgatagagatgggcaaagaaagagaaaatatgggccatggtgggaagctaggttactaaacaaggagatcgtttgaaatttaaagaaatca |
100 |
Q |
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| T |
24487224 |
tggttattatgaaagagatgggcaaagaaagagataatatgagacaaggtgggagggtaggcaactaaagaaggagattgtttgaaatttaaggaaagca |
24487323 |
T |
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| Q |
101 |
ttccacattgttgtaaaagagatcaaaaaattatgtgtttactccctataccacaccttataatcaaccaagtgcaagttgcttcaaaggtggtgaactc |
200 |
Q |
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| T |
24487324 |
tcccatgtttttgtaaaaccaattgaacaattgtgcatgcaatccc---aaaacgccttaaagtcaacaaagtgcaagttttttcaaatgtgatgaactc |
24487420 |
T |
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| Q |
201 |
atatcatgggcacaagatccaacaaatgcggtt |
233 |
Q |
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| T |
24487421 |
aaatcatggacacaagatccaacaaatgcggtt |
24487453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 5549552 - 5549675
Alignment:
| Q |
1 |
tggtcattatgatagagatgggcaaagaaagagaaaatatgggccatggtgggaagctaggttactaaacaaggagatcgtttgaaatttaaagaaatca |
100 |
Q |
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| T |
5549552 |
tggtcattaggatggacatgggcaaagaaagaggtaatatggaacatggtaggaagtcagacaactgaacaaggagattgttcgaaatttaaaggaaaca |
5549651 |
T |
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| Q |
101 |
ttccacattgttgtaaaagagatc |
124 |
Q |
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| T |
5549652 |
tcccgcattgctgtaaaaaagatc |
5549675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 5549702 - 5549778
Alignment:
| Q |
153 |
acaccttataatcaaccaagtgcaagttgcttcaaaggtggtgaactcatatcatgggcacaagatccaacaaatgc |
229 |
Q |
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| T |
5549702 |
acaccctacaatcaacaaactgcaaattgttgcaaaggtggagtactcagctcatgggcacaggatccaacaaatgc |
5549778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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