View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15461_high_8 (Length: 409)
Name: NF15461_high_8
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15461_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 3 - 394
Target Start/End: Complemental strand, 3807579 - 3807190
Alignment:
| Q |
3 |
tagagaatacttgaatgttcttttctaattttctctaatatagtttggttttataatgacatcttgggtagcaaatgtttagagtaggacccattaaaca |
102 |
Q |
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| T |
3807579 |
tagagaaaactttaatgtactttactaattttctctaatatattttgtttttatggagacatcttgaggagcaaatgattagaggaggacacattaaaca |
3807480 |
T |
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| Q |
103 |
tgacattttgaagacaatagtgggggtatattagaaatttcacattaaatagataaatacgttcaatgcaaagactctacgattgtatcattttccggtt |
202 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
3807479 |
tgacattttgaagacaatagtgggggtatattaggaatttaacattaaatagataaatacgttcaatgcaaagactatt--attgtatcattttccggtt |
3807382 |
T |
|
| Q |
203 |
cttatatccgaaggtcgtaaattctaataatattgcttttcataactatatttgttagcaataaatgacatttacctgatggaatatctgatgaagttct |
302 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
3807381 |
cttatatctgaaggtcgtaaattctaataatattgcttttcataactatatttgttagcaataaatcacatatacctgatggaatatctgatgaagttct |
3807282 |
T |
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| Q |
303 |
ccattttgttttacaaatagcaatattgaaaccagttttgtgaagcctcctaaaaacttccctcattaagcagtctcggcaagaggtgatag |
394 |
Q |
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| T |
3807281 |
ccattttgttttacaaatagcaatattgaaaccagttttgtgaagcctcgtaaaaacttccctcattaagcagtctcggcaagaggtgatag |
3807190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 275 - 376
Target Start/End: Complemental strand, 3775355 - 3775254
Alignment:
| Q |
275 |
tacctgatggaatatctgatgaagttctccattttgttttacaaatagcaatattgaaaccagttttgtgaagcctcctaaaaacttccctcattaagca |
374 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||||||| || ||||||||||||||||||| |
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| T |
3775355 |
tacctgacggaatatctgatgaagttctccattttgttttgcaaatagcactattgaaaccagctttctgaagcctcatagaaacttccctcattaagca |
3775256 |
T |
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| Q |
375 |
gt |
376 |
Q |
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|| |
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| T |
3775255 |
gt |
3775254 |
T |
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