View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15461_low_10 (Length: 381)
Name: NF15461_low_10
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15461_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 368
Target Start/End: Complemental strand, 36457502 - 36457142
Alignment:
| Q |
8 |
aaaggttgacttatgaaccgcaggcataatgtttcttgtgattaaattcaacattgactgcagcctcttatgcaggagcttccacccgaaaacctggact |
107 |
Q |
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| T |
36457502 |
aaaggatgaattatgatccgcaggcataatgtttcttgtgattaaattcaacattgactgcagcctcttctgcaggagcttccacacgaaaacctggact |
36457403 |
T |
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| Q |
108 |
ttcgacacatcgccaaattaggtgatatgctgctctaaactcgtcgcctgcatataaatctgacagcattctacatcagcttttgcagctgaatctctgc |
207 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36457402 |
ttcgacacatcgccaaattaggtgatatgctactttaaactcgtcgcctgcatataaatctgacagcattctacatcagcttttgcagctgaatctctgt |
36457303 |
T |
|
| Q |
208 |
gtagattctagtttccagacccagtatcaggctggtcctgccttggagacgctgacagcagcagcgtattcaaattctgcaccagttaggcctcccaatc |
307 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36457302 |
gtagactctagtttccagacccagtatcaggctggtcctgccttggagacgctgacagcagcagcgtattcaaattctgcaccagttaggcctcccaatc |
36457203 |
T |
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| Q |
308 |
aatagcattacgcttccaagatagcctctatgaccacccattattaatccactcccctatg |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36457202 |
aatagcattacgcttccaagatagcctctatgaccacccattattaatccactcccctatg |
36457142 |
T |
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