View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15461_low_12 (Length: 339)
Name: NF15461_low_12
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15461_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 37789497 - 37789190
Alignment:
| Q |
21 |
tgtctaagaaacgtttacgtttcaaaattaatatcaaactcatataagtcacgagcaaagcaaagtatagcataaaagagcttattgtttcagattcttt |
120 |
Q |
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| T |
37789497 |
tgtctaagaaacgtttacgtttcaaaattagtatcaaactcatataagtcacgagcaaagcaaagtatagcataaaagagcttattgtttcagattcttt |
37789398 |
T |
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| Q |
121 |
tccccaccccacacaacaagtcttgatctttcaactttattgtcnnnnnnnnnnnnnnnn----acaatgatggtttccaacaaaagtgtaactgcatta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
37789397 |
tccccaccccacacaacaagtcttgatctttcaactttattgtcctctctctctctctctctctacaatgatggtttccaacaacagtgtaactgcatta |
37789298 |
T |
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| Q |
217 |
ttatttctactgttggctggttttgtgagctcagatttaacagaagacagaaaagattgtgctgacaaacttgttactcttgctagttgtcttccttacg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789297 |
ttatttctactgttggctggttttgtgagctcagatttaacagaagacagaaaagattgtgctgacaaacttgttactcttgctagttgtcttccttacg |
37789198 |
T |
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| Q |
317 |
ttggtggt |
324 |
Q |
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|||||||| |
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| T |
37789197 |
ttggtggt |
37789190 |
T |
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