View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15461_low_13 (Length: 330)

Name: NF15461_low_13
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15461_low_13
NF15461_low_13
[»] chr6 (3 HSPs)
chr6 (19-306)||(28049351-28049636)
chr6 (300-330)||(15272991-15273021)
chr6 (297-330)||(2565369-2565402)
[»] chr3 (3 HSPs)
chr3 (19-306)||(44459006-44459294)
chr3 (19-306)||(41881029-41881313)
chr3 (302-330)||(11963015-11963043)
[»] chr1 (4 HSPs)
chr1 (19-306)||(50315720-50316003)
chr1 (297-330)||(23356683-23356716)
chr1 (302-330)||(15161588-15161616)
chr1 (302-330)||(34867508-34867536)
[»] chr4 (5 HSPs)
chr4 (21-303)||(26835755-26836037)
chr4 (301-330)||(6386725-6386754)
chr4 (297-330)||(11530050-11530083)
chr4 (302-330)||(5344265-5344293)
chr4 (298-330)||(44921900-44921932)
[»] chr7 (4 HSPs)
chr7 (113-307)||(11670240-11670434)
chr7 (296-330)||(27512791-27512825)
chr7 (297-330)||(34533503-34533536)
chr7 (302-330)||(11900045-11900073)
[»] scaffold0594 (1 HSPs)
scaffold0594 (298-330)||(5583-5615)
[»] scaffold0001 (1 HSPs)
scaffold0001 (298-330)||(400695-400727)
[»] chr8 (1 HSPs)
chr8 (298-330)||(17943349-17943381)
[»] chr5 (4 HSPs)
chr5 (302-330)||(8986900-8986928)
chr5 (301-329)||(15221505-15221533)
chr5 (298-330)||(30894116-30894148)
chr5 (302-330)||(35306992-35307020)


Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 28049636 - 28049351
Alignment:
Q  19 tattttgttctttaagtgttgtttttgttttgctctttcatccacgttttcaaattatctgccacaaaacacttactaattttcaattatcgattctctt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  28049636 tattttgttctttaagtgttgtttttgttttgctctttcatccacgtttttaaatcatcagccacaaaacacttactagttttcaattatcgattctctt 28049537  T
Q  119 gttggattttcgtcctccttaatgatgagctggtggttctcttgttgagagttctaaggcaggattgatttgtggaaatatatcttatatggattgtcca 218  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28049536 gttggattttcgtcctccttaatgatgagctagtggttctcttgttgagagttctaaggcaggattgatttgtggaaatatatcttatatggattgttca 28049437  T
Q  219 ttcaatttggtttgataaatttaaaaggcagcacaagctgaatatgtatgaaataatgtaaaaatgtcatagttgttcattttttaaa 306  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  28049436 ttcaatttggtttgataaatttaaaaggcagcacaagctga--atgtatgaaataatgtaaaaatgtcatagttgttcattttttaaa 28049351  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 330
Target Start/End: Original strand, 15272991 - 15273021
Alignment:
Q  300 ttttaaaggcttaattgcacttttggacccc 330  Q
    |||||||||||||||||||||||||||||||    
T  15272991 ttttaaaggcttaattgcacttttggacccc 15273021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 2565402 - 2565369
Alignment:
Q  297 attttttaaaggcttaattgcacttttggacccc 330  Q
    ||||| ||||||||||||||||||||||||||||    
T  2565402 attttataaaggcttaattgcacttttggacccc 2565369  T

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Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 44459294 - 44459006
Alignment:
Q  19 tattttgttctttaagtgttgtttttgttttgctctttcatccacgttttcaaattatctgccacaaaacacttactaattttcaattatcgattctctt 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  44459294 tattttgttctttaagtgttgtttttgtttttctctttcatccacgttttcaaatcatctaccacaaaacacttactaattttcaattattgattctctt 44459195  T
Q  119 gtt-ggattttcgtcctccttaatgatgagctggtggttctcttgttgagagttctaaggcaggattgatttgtggaaatatatcttatatggattgtcc 217  Q
    ||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44459194 gtttggattttcgtcctccttaacgatgagctgatggttctcttgttgagagttctaaggcaggattgatttgtggaaatatatcttatatggattgttc 44459095  T
Q  218 attcaatttggtttgataaatttaaaaggcagcacaagctgaatatgtatgaaataatgtaaaaatgtcatagttgttcattttttaaa 306  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44459094 attcaatttggtttgataaatttaaaaggccgcacaagctgaatatgtatgaaataatgtaaaaatgtcatagttgttcattttttaaa 44459006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 41881029 - 41881313
Alignment:
Q  19 tattttgttctttaagtgttgtttttgttttgctctttcatccacgttttcaaattatctgccacaaaacacttactaattttcaattatcgattctctt 118  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||    |||  ||||||||||||||||||||||||||| ||| || |||||||||    
T  41881029 tattttgttctgtaagtgttttttttgttttgctctttcatccacgta---aaaccatctgccacaaaacacttactaatttttaataatggattctctt 41881125  T
Q  119 gttggattttcgtcctccttaatgatgagctggtggttctcttgttgagagttctaaggcaggattgatttgtggaaatatatcttatatggattgtcca 218  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |    
T  41881126 gttggattttcgtcttccttaacgatgagctggtggttctcttgttgagagttctaaggccggattgatttgtggaaatatatcttatatggattgttta 41881225  T
Q  219 ttcaatttggtttgataaatttaaaaggcagcacaagctgaatatgtatgaaataatgtaaaaatgtcatagttgttcattttttaaa 306  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41881226 ttcaatttggtttgataaatttaaaatgcagcacaagctgaatttgtatgaaataatgtaaaaatgtcatagttgttcattttttaaa 41881313  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 11963043 - 11963015
Alignment:
Q  302 ttaaaggcttaattgcacttttggacccc 330  Q
    |||||||||||||||||||||||||||||    
T  11963043 ttaaaggcttaattgcacttttggacccc 11963015  T

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Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 50316003 - 50315720
Alignment:
Q  19 tattttgttctttaagtgttgtttttgttttgctctttcatccacgttttcaaattatctgccacaaaacacttactaattttcaattatcgattctctt 118  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||    |||  ||||||||||||||||||||||||||| |||||| |||||||||    
T  50316003 tattttgttctgtaagtgtt-tttttgttttgctctttcatccacgta---aaaccatctgccacaaaacacttactaatttttaattatggattctctt 50315908  T
Q  119 gttggattttcgtcctccttaatgatgagctggtggttctcttgttgagagttctaaggcaggattgatttgtggaaatatatcttatatggattgtcca 218  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  50315907 gttggattttcgtcttccttaatgatgagctggtggttctcttgttgagagttctaaggccggattgatttgtggaaatatatcttatatggattgttca 50315808  T
Q  219 ttcaatttggtttgataaatttaaaaggcagcacaagctgaatatgtatgaaataatgtaaaaatgtcatagttgttcattttttaaa 306  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  50315807 ttcaatttggtttgataaatttaaaaggcaacacaagctaaatatgtatgaaataatgtaaaaatgtcatagttgttctttttttaaa 50315720  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 23356683 - 23356716
Alignment:
Q  297 attttttaaaggcttaattgcacttttggacccc 330  Q
    ||||| ||||||||||||||||||||||||||||    
T  23356683 attttataaaggcttaattgcacttttggacccc 23356716  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 15161616 - 15161588
Alignment:
Q  302 ttaaaggcttaattgcacttttggacccc 330  Q
    |||||||||||||||||||||||||||||    
T  15161616 ttaaaggcttaattgcacttttggacccc 15161588  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 34867508 - 34867536
Alignment:
Q  302 ttaaaggcttaattgcacttttggacccc 330  Q
    |||||||||||||||||||||||||||||    
T  34867508 ttaaaggcttaattgcacttttggacccc 34867536  T

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Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 21 - 303
Target Start/End: Complemental strand, 26836037 - 26835755
Alignment:
Q  21 ttttgttctttaagtgttgtttttgttttgctctttcatccacgttttcaaattatctgccacaaaacacttactaattttcaattatcgattctcttgt 120  Q
    |||| |||||| ||||||||||||||||||||||||| |||| |||| ||||| ||||||||||||||  || ||||||||||||||| |||||||||||    
T  26836037 tttttttctttcagtgttgtttttgttttgctctttcgtccaagtttacaaatcatctgccacaaaactattcctaattttcaattatggattctcttgt 26835938  T
Q  121 tggattttcgtcctccttaatgatgagctggtggttctcttgttgagagttctaaggcaggattgatttgtggaaatatatcttatatggattgtccatt 220  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||||||  | |||||||||||||||||| ||||||| ||||||||||||||| ||||    
T  26835937 tggattttcgtcctccttaacgatgaaccggtggttctcttgttgagaggaccaaggcaggattgatttgtcgaaatatctcttatatggattgttcatt 26835838  T
Q  221 caatttggtttgataaatttaaaaggcagcacaagctgaatatgtatgaaataatgtaaaaatgtcatagttgttcatttttt 303  Q
    |||||||||||||||||||||||||| ||| |||| |||||||||||||||| ||||||||||||||| |||||||| |||||    
T  26835837 caatttggtttgataaatttaaaaggtagctcaagttgaatatgtatgaaatcatgtaaaaatgtcattgttgttcagttttt 26835755  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 6386725 - 6386754
Alignment:
Q  301 tttaaaggcttaattgcacttttggacccc 330  Q
    ||||||||||||||||||||||||||||||    
T  6386725 tttaaaggcttaattgcacttttggacccc 6386754  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 11530083 - 11530050
Alignment:
Q  297 attttttaaaggcttaattgcacttttggacccc 330  Q
    |||||| |||||||||||||||||||||||||||    
T  11530083 atttttaaaaggcttaattgcacttttggacccc 11530050  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 5344265 - 5344293
Alignment:
Q  302 ttaaaggcttaattgcacttttggacccc 330  Q
    |||||||||||||||||||||||||||||    
T  5344265 ttaaaggcttaattgcacttttggacccc 5344293  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 44921932 - 44921900
Alignment:
Q  298 ttttttaaaggcttaattgcacttttggacccc 330  Q
    |||||| ||||||||||||||||||||||||||    
T  44921932 tttttttaaggcttaattgcacttttggacccc 44921900  T

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Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 113 - 307
Target Start/End: Complemental strand, 11670434 - 11670240
Alignment:
Q  113 tctcttgttggattttcgtcctccttaatgatgagctggtggttctcttgttgagagttctaaggcaggattgatttgtggaaatatatcttatatggat 212  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  11670434 tctcttgttggattttcgtcttccttaacgatgagctggtggttctcttgttgagagttctaagggcggattgatttgtggaaatatatcttacatggat 11670335  T
Q  213 tgtccattcaatttggtttgataaatttaaaaggcagcacaagctgaatatgtatgaaataatgtaaaaatgtcatagttgttcattttttaaag 307  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11670334 tgttcattcaatttggtttgataaatttaaaaggcagcacaagctgaatatgtatgaaataatgtaaaaatgtcatagttgttcattttataaag 11670240  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 27512791 - 27512825
Alignment:
Q  296 cattttttaaaggcttaattgcacttttggacccc 330  Q
    |||||||||||||||||||||||||||||||||||    
T  27512791 cattttttaaaggcttaattgcacttttggacccc 27512825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 34533536 - 34533503
Alignment:
Q  297 attttttaaaggcttaattgcacttttggacccc 330  Q
    |||| |||||||||||||||||||||||||||||    
T  34533536 atttgttaaaggcttaattgcacttttggacccc 34533503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 11900045 - 11900073
Alignment:
Q  302 ttaaaggcttaattgcacttttggacccc 330  Q
    |||||||||||||||||||||||||||||    
T  11900045 ttaaaggcttaattgcacttttggacccc 11900073  T

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Target: scaffold0594 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 5583 - 5615
Alignment:
Q  298 ttttttaaaggcttaattgcacttttggacccc 330  Q
    |||||| ||||||||||||||||||||||||||    
T  5583 tttttttaaggcttaattgcacttttggacccc 5615  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 400695 - 400727
Alignment:
Q  298 ttttttaaaggcttaattgcacttttggacccc 330  Q
    ||||||| |||||||||||||||||||||||||    
T  400695 ttttttataggcttaattgcacttttggacccc 400727  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 17943349 - 17943381
Alignment:
Q  298 ttttttaaaggcttaattgcacttttggacccc 330  Q
    |||| ||||||||||||||||||||||||||||    
T  17943349 ttttgtaaaggcttaattgcacttttggacccc 17943381  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 8986928 - 8986900
Alignment:
Q  302 ttaaaggcttaattgcacttttggacccc 330  Q
    |||||||||||||||||||||||||||||    
T  8986928 ttaaaggcttaattgcacttttggacccc 8986900  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 329
Target Start/End: Complemental strand, 15221533 - 15221505
Alignment:
Q  301 tttaaaggcttaattgcacttttggaccc 329  Q
    |||||||||||||||||||||||||||||    
T  15221533 tttaaaggcttaattgcacttttggaccc 15221505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 30894116 - 30894148
Alignment:
Q  298 ttttttaaaggcttaattgcacttttggacccc 330  Q
    ||||||| |||||||||||||||||||||||||    
T  30894116 ttttttacaggcttaattgcacttttggacccc 30894148  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 35307020 - 35306992
Alignment:
Q  302 ttaaaggcttaattgcacttttggacccc 330  Q
    |||||||||||||||||||||||||||||    
T  35307020 ttaaaggcttaattgcacttttggacccc 35306992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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