View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15461_low_17 (Length: 274)
Name: NF15461_low_17
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15461_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 13419013 - 13419270
Alignment:
| Q |
1 |
cttacctccaagtaaagaaaatacaggaagctctagaggctttgccactccaccaaccattacaagttttccattagatttcaataaagcaaccaatggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13419013 |
cttacctccaagtaaagaaaatacaggaagctctagaggctttgccactccaccaaccattacaagttttccattagatttcaataaagcaaccaatggt |
13419112 |
T |
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| Q |
101 |
aaaataggatggttcgctgaaactgtgtcaataataccattcaaagtacccattgcagcctatgaaatgttgtacaatattagtttattgattaccattg |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13419113 |
aaaataggatggttcgccgaaactgtgtcaataataccattcaaagtacccattgcagtctatgaaatgttgtacaatattagtttattgattaccattg |
13419212 |
T |
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| Q |
201 |
ccaatttctaaaatatttaaattcacaaattaatcaaatgaatcatatacctgcatct |
258 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
13419213 |
ccaatttctaaaatattttaattcacaaatgaatcaaatgaatcatatacctgcatct |
13419270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 13425903 - 13426161
Alignment:
| Q |
1 |
cttacctccaagtaaagaaaatacaggaagctctagaggctttgccactccaccaaccattacaagttttccattagatttcaataaagcaaccaatggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
13425903 |
cttacctccaagtaaagaaaatacaggaagctctagaggctttgccaccccaccaaccattacaagttttccattagatttcaataaaccaatcaatggt |
13426002 |
T |
|
| Q |
101 |
aaaataggatggttcgctgaaactgtgtcaataataccattcaaagtacccattgcagccta-tgaaatgttgtacaatattagtttattgattaccatt |
199 |
Q |
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| T |
13426003 |
aagataggatgacttgccgaaacagtgtcgataataccattcaaagtacccattgcagcctattaaaacgttgtacaatattagtttcttgattaacatt |
13426102 |
T |
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| Q |
200 |
gccaatttctaaaatatttaaattcacaaattaatcaaatgaatcatatacctgcatct |
258 |
Q |
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| T |
13426103 |
ctcgatttctgaaataatgaaattcgcaaatcaatcaaatgaatcatatacctgcatct |
13426161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 13446559 - 13446821
Alignment:
| Q |
1 |
cttacctccaagtaaagaaaatacaggaagctctagaggctttgccactccaccaaccattacaagttttccattagatttcaataaagcaaccaatggt |
100 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||| ||| ||||||| |
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| T |
13446559 |
cttacctccaagtaaagaaaatataggaagttctagaggctttgctactgcaccaaccattaccagctttccattagatttcaataaaccaatcaatggt |
13446658 |
T |
|
| Q |
101 |
aaaataggatggttcgctgaaactgtgtcaataataccattcaaagtacccattgcagcctatgaaatgttgtacaatattagttt----attgattacc |
196 |
Q |
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| || |||||| |||| ||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||| ||||||||| ||| |||| | |
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| T |
13446659 |
acaacaggatgactcgccgaaactgtgtcaataatgccattcaaagtactcgttgcagcctataaaatgttgtacattattagtttcttgattaattaac |
13446758 |
T |
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| Q |
197 |
attgccaatttctaaaat-atttaaattcacaaattaatcaaatgaatcatatacctgcatct |
258 |
Q |
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||| |||||||| |||| || ||||||| |||||||||||||||||||||||||||||||| |
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| T |
13446759 |
attatcaatttctgaaataatgaaaattcagaaattaatcaaatgaatcatatacctgcatct |
13446821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 13453420 - 13453579
Alignment:
| Q |
3 |
tacctccaagtaaagaaaatacaggaagctctagaggctttgccactccaccaaccattacaagttttccattagatttcaataaagcaaccaatggtaa |
102 |
Q |
| |
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||||| ||||||||| ||| ||||||||||||||||||||| | | |||||||||||||||| ||||||| ||| || | |||| ||| || ||||| |
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| T |
13453420 |
tacctgcaagtaaaggaaaaacaggaagctctagaggcttttcaggtgcaccaaccattacaagctttccatgagacttgagtaaaccaatcagaggtaa |
13453519 |
T |
|
| Q |
103 |
aataggatggttcgctgaaactgtgtcaataataccattcaaagtacccattgcagccta |
162 |
Q |
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| T |
13453520 |
tagcggatgatccgctgaaactgtgtcgataataccatccaaagtagccgttgcagccta |
13453579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 13389686 - 13389574
Alignment:
| Q |
51 |
caccaaccattacaagttttccattagatttcaataaagcaaccaatggtaaaataggatggttcgctgaaactgtgtcaataataccattcaaagtacc |
150 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| ||| | ||||| |||||||| || ||||||||||| || || ||||||| ||||||||| |
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| T |
13389686 |
caccaaccattacaagttttccatgagacttcaataatccaattaggggtaagataggatgatttgctgaaactgtatcgatgataccatccaaagtacc |
13389587 |
T |
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| Q |
151 |
cattgcagcctat |
163 |
Q |
| |
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|| ||||| |||| |
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| T |
13389586 |
caatgcagactat |
13389574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 13394084 - 13393967
Alignment:
| Q |
51 |
caccaaccattacaagttttccattagatttcaataaagcaaccaatggtaaaataggatggttcgctgaaactgtgtcaataataccattcaaagtacc |
150 |
Q |
| |
|
|||| ||||||||||||||||| | | |||| |||||| |||| | ||||| | |||||| | |||||||||||| || || || |||| ||||||||| |
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| T |
13394084 |
caccgaccattacaagttttccgtgatattttaataaaccaactagaggtaagagaggatgatccgctgaaactgtatcgatgatgccatccaaagtacc |
13393985 |
T |
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| Q |
151 |
cattgcagcctatgaaat |
168 |
Q |
| |
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||| ||||||||| |||| |
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| T |
13393984 |
catcgcagcctataaaat |
13393967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 13385860 - 13385748
Alignment:
| Q |
51 |
caccaaccattacaagttttccattagatttcaataaagcaaccaatggtaaaataggatggttcgctgaaactgtgtcaataataccattcaaagtacc |
150 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||| ||| | ||| || | |||||| || |||||||| || ||||| ||||||| ||||||||| |
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| T |
13385860 |
caccaaccattacaagttttccatgagacttcagtaatccaagtagtggcaagacaggatgatttgctgaaacggtatcaatgataccatccaaagtacc |
13385761 |
T |
|
| Q |
151 |
cattgcagcctat |
163 |
Q |
| |
|
|| ||||| |||| |
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| T |
13385760 |
cagtgcagactat |
13385748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 13412715 - 13412826
Alignment:
| Q |
51 |
caccaaccattacaagttttccattagatttcaataaagcaaccaatggtaaaataggatggttcgctgaaactgtgtcaataataccattcaaagtacc |
150 |
Q |
| |
|
|||||| ||||| ||| ||||||| ||| ||||| | | ||| || |||||| | |||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
13412715 |
caccaagcattataagctttccatgagacttcaagagaccaatcattggtaagagaggatgaacagctgaaactgtgtcaataataccatccaaagtacc |
13412814 |
T |
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| Q |
151 |
cattgcagccta |
162 |
Q |
| |
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|||||| |||| |
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| T |
13412815 |
aattgcacccta |
13412826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 28431302 - 28431150
Alignment:
| Q |
10 |
aagtaaagaaaatacaggaagctctagaggctttgccactccaccaaccattacaagttttccattagatttcaataaagcaaccaatggtaaaatagga |
109 |
Q |
| |
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|||||||| |||||| || ||||| |||||||| | | |||||||||| ||||||||||||| ||||||||| | | ||| ||| ||||| | |||| |
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| T |
28431302 |
aagtaaaggaaatactggtagctccagaggcttctcaggtgcaccaaccataacaagttttccatgagatttcaaaagaccaatcaaaggtaacaaagga |
28431203 |
T |
|
| Q |
110 |
tggttcgctgaaactgtgtcaataataccattcaaagtacccattgcagccta |
162 |
Q |
| |
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||| || |||||||||||||| ||||||| ||| || ||| |||||||||| |
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|
| T |
28431202 |
tggacggcagaaactgtgtcaatgataccatccaaggtgcccgttgcagccta |
28431150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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