View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15461_low_18 (Length: 250)

Name: NF15461_low_18
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15461_low_18
NF15461_low_18
[»] chr4 (15 HSPs)
chr4 (18-250)||(25643311-25643538)
chr4 (181-246)||(22175989-22176055)
chr4 (181-229)||(17672008-17672057)
chr4 (181-229)||(17709763-17709812)
chr4 (165-222)||(19900570-19900627)
chr4 (159-234)||(14648880-14648955)
chr4 (181-229)||(19374857-19374905)
chr4 (159-229)||(10106995-10107065)
chr4 (167-229)||(22218645-22218707)
chr4 (181-229)||(13128918-13128967)
chr4 (181-229)||(13908860-13908909)
chr4 (184-229)||(25121270-25121315)
chr4 (181-229)||(9052680-9052728)
chr4 (181-240)||(11490538-11490598)
chr4 (159-222)||(13692720-13692783)
[»] chr7 (10 HSPs)
chr7 (158-228)||(23093293-23093363)
chr7 (181-229)||(2563824-2563872)
chr7 (181-229)||(26134792-26134840)
chr7 (159-218)||(5047442-5047501)
chr7 (184-229)||(2953582-2953627)
chr7 (181-246)||(7397202-7397267)
chr7 (181-241)||(10587056-10587117)
chr7 (181-241)||(11221196-11221257)
chr7 (197-229)||(5108588-5108620)
chr7 (185-241)||(6042471-6042527)
[»] chr1 (8 HSPs)
chr1 (159-229)||(26540880-26540950)
chr1 (181-229)||(21847640-21847688)
chr1 (159-229)||(16359856-16359925)
chr1 (181-241)||(18736272-18736333)
chr1 (182-227)||(27117764-27117810)
chr1 (181-229)||(15544010-15544059)
chr1 (181-229)||(16179013-16179062)
chr1 (181-229)||(21449095-21449144)
[»] chr5 (12 HSPs)
chr5 (159-228)||(32417401-32417470)
chr5 (181-246)||(24266982-24267047)
chr5 (181-246)||(24343613-24343678)
chr5 (181-235)||(26121362-26121416)
chr5 (159-227)||(15544035-15544103)
chr5 (181-229)||(18208293-18208341)
chr5 (159-227)||(27921448-27921515)
chr5 (181-227)||(28253287-28253333)
chr5 (181-229)||(19086223-19086272)
chr5 (181-241)||(25402369-25402430)
chr5 (185-245)||(25550532-25550593)
chr5 (181-229)||(36175140-36175188)
[»] chr8 (10 HSPs)
chr8 (158-229)||(31288341-31288412)
chr8 (184-229)||(24119813-24119858)
chr8 (181-241)||(29382393-29382454)
chr8 (197-241)||(24269620-24269664)
chr8 (197-229)||(24644860-24644892)
chr8 (181-229)||(44011068-44011116)
chr8 (197-244)||(17972193-17972240)
chr8 (197-246)||(30122182-30122231)
chr8 (181-229)||(30783785-30783834)
chr8 (158-229)||(5052965-5053036)
[»] scaffold0008 (1 HSPs)
scaffold0008 (181-246)||(54866-54932)
[»] scaffold0042 (1 HSPs)
scaffold0042 (181-229)||(29913-29961)
[»] chr3 (10 HSPs)
chr3 (171-229)||(8143611-8143669)
chr3 (171-229)||(21825913-21825971)
chr3 (181-245)||(21301924-21301989)
chr3 (197-241)||(8889184-8889229)
chr3 (156-229)||(27542959-27543032)
chr3 (182-229)||(821558-821606)
chr3 (158-222)||(12752190-12752254)
chr3 (158-229)||(12759370-12759442)
chr3 (181-241)||(18736704-18736764)
chr3 (197-229)||(21074582-21074614)
[»] scaffold0622 (1 HSPs)
scaffold0622 (181-228)||(734-782)
[»] scaffold0005 (1 HSPs)
scaffold0005 (159-234)||(168337-168412)
[»] chr6 (7 HSPs)
chr6 (181-245)||(15466376-15466440)
chr6 (171-229)||(17729148-17729207)
chr6 (182-229)||(34478532-34478579)
chr6 (181-229)||(9726028-9726077)
chr6 (181-245)||(12183359-12183424)
chr6 (181-229)||(23645811-23645860)
chr6 (199-246)||(9838380-9838428)
[»] chr2 (6 HSPs)
chr2 (158-218)||(12557764-12557824)
chr2 (181-229)||(17349363-17349411)
chr2 (159-229)||(8447094-8447164)
chr2 (181-238)||(27909154-27909212)
chr2 (181-229)||(17743520-17743569)
chr2 (197-246)||(23011790-23011839)
[»] scaffold0394 (1 HSPs)
scaffold0394 (159-218)||(13963-14022)
[»] scaffold0043 (1 HSPs)
scaffold0043 (185-222)||(89905-89942)
[»] scaffold0957 (1 HSPs)
scaffold0957 (197-245)||(3175-3223)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 25643311 - 25643538
Alignment:
Q  18 aaccatcacagttcttattgaagaaacaatcagaatgatcaagatttattatctaataaccaaataactgatggtagtggaaactttcaaaggtggatca 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25643311 aaccatcacagtacttattgaagaaacaatcagaatgatcaagatttattatctaataaccaaataactgatggtagtggaaactttcaaaggtgaatca 25643410  T
Q  118 aatggatattcca--ggtggtggaaattcaagaggtagaggagtgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagt 215  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||       |||||| | |||| |||||||||| ||||||||||||||||| |    
T  25643411 aatggatattccaggggtggtggaaattcaagaggtagaggagtgatgg-------taggtaagtgtactaaatcgtttgtcaagtaataaagtgtaact 25643503  T
Q  216 agagtattgtatcctcaggggttgtcattttaatt 250  Q
    ||||||| |||||| ||||||||||||||| ||||    
T  25643504 agagtatcgtatccacaggggttgtcatttcaatt 25643538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 22176055 - 22175989
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcaggggttgtcatttt 246  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||||  || | ||||||||||    
T  22176055 gtaccaaatcgtttatcaagtaataaagtgataagtagagtattgtatccatagagattgtcatttt 22175989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 17672008 - 17672057
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  17672008 gtaccaaatcgtttaccaagtaataaagtgataagtagagtattgtatcc 17672057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 17709763 - 17709812
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  17709763 gtaccaaatcgtttaccaagtaataaagtgataagtagagtattgtatcc 17709812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 19900570 - 19900627
Alignment:
Q  165 tcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtat 222  Q
    ||||||||||| | | ||||||||| ||||  ||||||||||||||||||||||||||    
T  19900570 tcagatttaggcaagtgtaccaaattgtttaccaagtaataaagtgtaagtagagtat 19900627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 14648880 - 14648955
Alignment:
Q  159 tgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcagg 234  Q
    ||||||||||||| ||| | | ||||||||||||||  |||||||||||||| |||||||||||| |||||| ||||    
T  14648880 tgatggtcagatt-aggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacagg 14648955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 19374905 - 19374857
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||||||||||  ||||||||||| |||||||||||||| ||||||    
T  19374905 gtaccaaatcgtttatcaagtaataaaatgtaagtagagtatcgtatcc 19374857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 10106995 - 10107065
Alignment:
Q  159 tgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||||||| |||||||| | | ||| ||||||||||  ||||||||||| || |||||||||||| |||||    
T  10106995 tgatggtcggatttaggcaagtgtagcaaatcgtttaccaagtaataaattgcaagtagagtattctatcc 10107065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 22218707 - 22218645
Alignment:
Q  167 agatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||||||||||   |||| |||| ||||  |||||||||||||||||||||||||| ||||||    
T  22218707 agatttaggtaactgtacaaaattgtttatcaagtaataaagtgtaagtagagtatcgtatcc 22218645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 13128967 - 13128918
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||||||||||  ||||||||||| || |||||||||||||||||||    
T  13128967 gtaccaaatcgtttaccaagtaataaaatgataagtagagtattgtatcc 13128918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 13908860 - 13908909
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  13908860 gtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatcc 13908909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 25121315 - 25121270
Alignment:
Q  184 ccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||||||||||  |||||||||||||||||||| ||||| ||||||    
T  25121315 ccaaatcgtttaccaagtaataaagtgtaagtatagtatcgtatcc 25121270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 9052680 - 9052728
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||||||||| |||  ||||||||||| |||||||||||||| ||||||    
T  9052680 gtaccaaatcatttaccaagtaataaaatgtaagtagagtatcgtatcc 9052728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 11490538 - 11490598
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcaggggttgt 240  Q
    ||||||||| ||||  |||||||||||||| |||||||||||| |||||| ||||| ||||    
T  11490538 gtaccaaattgtttatcaagtaataaagtgataagtagagtatcgtatccacagggattgt 11490598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 13692783 - 13692720
Alignment:
Q  159 tgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtg-taagtagagtat 222  Q
    ||||||||||||| ||| | | ||||||||||||||  |||||||||||||| ||||||||||||    
T  13692783 tgatggtcagatt-aggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtat 13692720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 23093293 - 23093363
Alignment:
Q  158 gtgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatc 228  Q
    |||||||||| ||||||| | | ||||||||||||||   |||||||||||||||||||||||||||||||    
T  23093293 gtgatggtcatatttaggcaagtgtaccaaatcgtttactaagtaataaagtgtaagtagagtattgtatc 23093363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 2563824 - 2563872
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  2563824 gtaccaaatcgtttaccaagtaataaagtgtaagtagagtatcgtatcc 2563872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 26134840 - 26134792
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||||||||||  ||||||||||| |||||||||||||| ||||||    
T  26134840 gtaccaaatcgtttaccaagtaataaaatgtaagtagagtatcgtatcc 26134792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 5047501 - 5047442
Alignment:
Q  159 tgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtaga 218  Q
    |||||||| |||||||| | | |||||||||| |||  ||||||||||||||||||||||    
T  5047501 tgatggtcggatttaggcaagtgtaccaaatcatttaccaagtaataaagtgtaagtaga 5047442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 2953582 - 2953627
Alignment:
Q  184 ccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||||||||||  ||| |||||||||||||||||||||| ||||||    
T  2953582 ccaaatcgtttatcaaataataaagtgtaagtagagtatcgtatcc 2953627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 7397202 - 7397267
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcctcaggggttgtcatttt 246  Q
    |||||||| |||||  ||||||||||||||||| |||||||| |||||| || || ||||| ||||    
T  7397202 gtaccaaaccgtttaccaagtaataaagtgtaactagagtatcgtatccacatggattgtcgtttt 7397267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 10587117 - 10587056
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcaggggttgtc 241  Q
    ||||||||||||||  |||||||||||||| |||||||||||| |||||  ||||| |||||    
T  10587117 gtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatctacagggattgtc 10587056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 11221257 - 11221196
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcaggggttgtc 241  Q
    ||||||||||||||   |||||||||| || ||||||||||||||||||| ||||| |||||    
T  11221257 gtaccaaatcgtttactaagtaataaattgataagtagagtattgtatccacagggattgtc 11221196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 5108588 - 5108620
Alignment:
Q  197 caagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||||||||||||||||||||||||| ||||||    
T  5108588 caagtaataaagtgtaagtagagtatcgtatcc 5108620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 6042471 - 6042527
Alignment:
Q  185 caaatcgtttgacaagtaataaagtgtaagtagagtattgtatcctcaggggttgtc 241  Q
    ||||||||||  || |||||||| |||||||||||||| |||||| ||| |||||||    
T  6042471 caaatcgtttaccatgtaataaaatgtaagtagagtatcgtatccacagaggttgtc 6042527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 26540880 - 26540950
Alignment:
Q  159 tgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||||||| |||||||| | | ||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  26540880 tgatggtcggatttaggcaagtgtaccaaatcgtttaccaagtaataaagtgtaagtagagtatcgtatcc 26540950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 21847640 - 21847688
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||||||||||  ||||||||||||| |||||||||||||||||||    
T  21847640 gtaccaaatcgtttaccaagtaataaagtctaagtagagtattgtatcc 21847688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 16359856 - 16359925
Alignment:
Q  159 tgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||||||||| ||| | | ||||||||||||||  ||||||||||| |||||||| ||||||||||||    
T  16359856 tgatggtcagatt-aggcaagtgtaccaaatcgtttaccaagtaataaaatgtaagtatagtattgtatcc 16359925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 18736333 - 18736272
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcaggggttgtc 241  Q
    |||||||||||||| ||||||||||||||| ||||||| |||| |||||| ||||| |||||    
T  18736333 gtaccaaatcgtttaacaagtaataaagtgataagtagtgtatcgtatccacagggattgtc 18736272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 27117810 - 27117764
Alignment:
Q  182 taccaaatcgtttgacaagtaataaagtg-taagtagagtattgtat 227  Q
    |||||||||||||  |||||||||||||| |||||||||||||||||    
T  27117810 taccaaatcgtttaccaagtaataaagtgataagtagagtattgtat 27117764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 15544059 - 15544010
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  15544059 gtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatcc 15544010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 16179013 - 16179062
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    |||||||||||||| |||||||||||| || |||||||||||| ||||||    
T  16179013 gtaccaaatcgtttaacaagtaataaactgataagtagagtatcgtatcc 16179062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 21449095 - 21449144
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  21449095 gtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatcc 21449144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 32417470 - 32417401
Alignment:
Q  159 tgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatc 228  Q
    ||||||||  ||||||||| | ||||||||||||||  ||||||||||||||||||||||||||| ||||    
T  32417470 tgatggtcgaatttaggtaagtgtaccaaatcgtttatcaagtaataaagtgtaagtagagtattatatc 32417401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 24267047 - 24266982
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcctcaggggttgtcatttt 246  Q
    ||||||||||||||  |||||||||||||||||||||||||| |||||| || || || |||||||    
T  24267047 gtaccaaatcgtttaccaagtaataaagtgtaagtagagtatcgtatccacaaggattatcatttt 24266982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 24343678 - 24343613
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcctcaggggttgtcatttt 246  Q
    ||||||||||||||  |||||||||||||||||||||||||| |||||| || || || |||||||    
T  24343678 gtaccaaatcgtttaccaagtaataaagtgtaagtagagtatcgtatccacaaggattatcatttt 24343613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 26121416 - 26121362
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcctcaggg 235  Q
    ||||||||||||||  ||||||||||| |||||||||||||| |||||| |||||    
T  26121416 gtaccaaatcgtttagcaagtaataaaatgtaagtagagtatagtatccacaggg 26121362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 15544035 - 15544103
Alignment:
Q  159 tgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtat 227  Q
    |||||||| |||||||| | | ||||||||||||||  ||||||||||| ||| |||||||||| ||||    
T  15544035 tgatggtcggatttaggcaagtgtaccaaatcgtttaccaagtaataaactgtcagtagagtatcgtat 15544103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 18208341 - 18208293
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||||||||||   ||||||||||||||||||||||||| ||||||    
T  18208341 gtaccaaatcgtttacaaagtaataaagtgtaagtagagtatcgtatcc 18208293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 27921515 - 27921448
Alignment:
Q  159 tgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtat 227  Q
    ||||||||||||||||| | | |||| |||| ||||| ||||||||||||||||||||| |||| ||||    
T  27921515 tgatggtcagatttaggcaagtgtac-aaattgtttgtcaagtaataaagtgtaagtagtgtatcgtat 27921448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 28253287 - 28253333
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtat 227  Q
    ||||||||||||||  |||||||||||||||||||||| ||| ||||    
T  28253287 gtaccaaatcgtttaccaagtaataaagtgtaagtagaatatcgtat 28253333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 19086272 - 19086223
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||| ||||||||||||| |||||    
T  19086272 gtaccaaatcgtttaccaagtaataaagtgataagtagagtattatatcc 19086223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 25402430 - 25402369
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcaggggttgtc 241  Q
    ||||||||| ||||| |||||||  ||||| ||||||||||||||||||| ||||| |||||    
T  25402430 gtaccaaattgtttgccaagtaaggaagtgataagtagagtattgtatccacagggattgtc 25402369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 25550593 - 25550532
Alignment:
Q  185 caaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcaggggttgtcattt 245  Q
    ||||||||||  |||||||||||||| ||||||||||||  ||||| ||||| |||||||||    
T  25550593 caaatcgtttaccaagtaataaagtgataagtagagtatcatatccacagggattgtcattt 25550532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 36175140 - 36175188
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||||  ||||||||| ||||||    
T  36175140 gtaccaaatcgtttaccaagtaataaagtgtttgtagagtatcgtatcc 36175188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 31288341 - 31288412
Alignment:
Q  158 gtgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||||| |||||||| | | ||||||||||||||  |||||||||||||||||||| ||||| ||||||    
T  31288341 gtgatggtcggatttaggaaagtgtaccaaatcgtttaccaagtaataaagtgtaagtaaagtatcgtatcc 31288412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 24119858 - 24119813
Alignment:
Q  184 ccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||||||||||  ||||| |||||||||||||||||||||||||||    
T  24119858 ccaaatcgtttaccaagttataaagtgtaagtagagtattgtatcc 24119813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 29382454 - 29382393
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcaggggttgtc 241  Q
    ||||||||||||||  |||||||||||||| |||||||||||| |||||| ||||| |||||    
T  29382454 gtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacagggattgtc 29382393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 24269620 - 24269664
Alignment:
Q  197 caagtaataaagtgtaagtagagtattgtatcctcaggggttgtc 241  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||    
T  24269620 caagtaataaagtgtaagtagagtatcgtatccacagggattgtc 24269664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 24644860 - 24644892
Alignment:
Q  197 caagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||||||||||||||||||||||||||||||||    
T  24644860 caagtaataaagtgtaagtagagtattgtatcc 24644892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 44011116 - 44011068
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||||||||||   ||||||||||||||||||||||||| ||||||    
T  44011116 gtaccaaatcgtttacgaagtaataaagtgtaagtagagtatcgtatcc 44011068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 17972193 - 17972240
Alignment:
Q  197 caagtaataaagtgtaagtagagtattgtatcctcaggggttgtcatt 244  Q
    |||||||||||||||||||||||||| |||||| || || ||||||||    
T  17972193 caagtaataaagtgtaagtagagtatcgtatccgcatggattgtcatt 17972240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 30122231 - 30122182
Alignment:
Q  197 caagtaataaagtgtaagtagagtattgtatcctcaggggttgtcatttt 246  Q
    ||||||||||||||||||||||||||  ||||| || || ||||||||||    
T  30122231 caagtaataaagtgtaagtagagtatcatatccacatggattgtcatttt 30122182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 30783834 - 30783785
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  30783834 gtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatcc 30783785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 5053036 - 5052965
Alignment:
Q  158 gtgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    |||||||||||||| ||| | | ||||||||||||||  |  ||||||||||| |||||||||||||||||||    
T  5053036 gtgatggtcagatt-aggcaagtgtaccaaatcgtttaccgggtaataaagtgctaagtagagtattgtatcc 5052965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 54866 - 54932
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcaggggttgtcatttt 246  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||||||| ||||| ||||| ||||    
T  54866 gtaccaaatcgtttaccaagtaataaagtgataagtagagtattgtatccacagggattgtcgtttt 54932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 29913 - 29961
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  29913 gtaccaaatcgtttaccaagtaataaagtgtaagtagagtatggtatcc 29961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 8143611 - 8143669
Alignment:
Q  171 ttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||| | ||||||||||||||   ||| ||||||||||||||||||||||||||||    
T  8143611 ttaggtaagtgtaccaaatcgtttactaagcaataaagtgtaagtagagtattgtatcc 8143669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 21825971 - 21825913
Alignment:
Q  171 ttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||| | ||||||||||||||  | |||||||||||||||||||||||| ||||||    
T  21825971 ttaggtaagtgtaccaaatcgtttaccgagtaataaagtgtaagtagagtatcgtatcc 21825913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 21301924 - 21301989
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcaggggttgtcattt 245  Q
    ||||||||||||||  |||||||||||||| |||||||||||| |||||| || || |||||||||    
T  21301924 gtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatggattgtcattt 21301989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 8889229 - 8889184
Alignment:
Q  197 caagtaataaagtg-taagtagagtattgtatcctcaggggttgtc 241  Q
    |||||||||||||| ||||||||||||||||||| ||||| |||||    
T  8889229 caagtaataaagtgataagtagagtattgtatccacagggattgtc 8889184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 27543032 - 27542959
Alignment:
Q  156 gagtgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||||||||||  |||||| || | ||| ||||||||||  |||| |||||||| |||||||||||| ||||||    
T  27543032 gagtgatggtcgaatttagataagtgtatcaaatcgtttaccaagaaataaagtataagtagagtatcgtatcc 27542959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 821606 - 821558
Alignment:
Q  182 taccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    |||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  821606 taccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatcc 821558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 12752190 - 12752254
Alignment:
Q  158 gtgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtat 222  Q
    |||||||||| ||||||  | | ||||||||||||||  |||||||| |||||||||| ||||||    
T  12752190 gtgatggtcatatttagccaagtgtaccaaatcgtttaccaagtaatgaagtgtaagtggagtat 12752254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 12759370 - 12759442
Alignment:
Q  158 gtgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||||| |||||||  | | ||||||||| ||||  |||||||||||||| |||||||||||| ||||||    
T  12759370 gtgatggtctgatttagacaagtgtaccaaattgtttaccaagtaataaagtgataagtagagtatcgtatcc 12759442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 18736764 - 18736704
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcctcaggggttgtc 241  Q
    ||||||||||||||  ||||||||||||| |||||||| ||| |||||  |||| ||||||    
T  18736764 gtaccaaatcgtttaccaagtaataaagtataagtagaatatcgtatctacaggtgttgtc 18736704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 21074614 - 21074582
Alignment:
Q  197 caagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||||||||||||||||||||||||| ||||||    
T  21074614 caagtaataaagtgtaagtagagtatcgtatcc 21074582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 734 - 782
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatc 228  Q
    ||||||||||||||  |||||||||||||| ||||||||||||||||||    
T  734 gtaccaaatcgtttaccaagtaataaagtgataagtagagtattgtatc 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 168412 - 168337
Alignment:
Q  159 tgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcagg 234  Q
    ||||||||||||| ||| | | ||||||||||||||  |||||||||||||| |||||||||||| |||||| ||||    
T  168412 tgatggtcagatt-aggcaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacagg 168337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 15466376 - 15466440
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcctcaggggttgtcattt 245  Q
    ||||||||||||||  |||||||||||||||| ||||||||| |||||   |||| |||||||||    
T  15466376 gtaccaaatcgtttaccaagtaataaagtgtacgtagagtatcgtatcaatagggattgtcattt 15466440  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 17729148 - 17729207
Alignment:
Q  171 ttaggtatgggtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||| | ||||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  17729148 ttaggtaagtgtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatcc 17729207  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 34478532 - 34478579
Alignment:
Q  182 taccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||||||||||||  ||| |||||||||||||||||||||| ||||||    
T  34478532 taccaaatcgtttaccaaataataaagtgtaagtagagtatcgtatcc 34478579  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 9726028 - 9726077
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  9726028 gtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatcc 9726077  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 12183424 - 12183359
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcaggggttgtcattt 245  Q
    ||||||||||||||  |||||||||||||| |||||| ||||| |||||| || || |||||||||    
T  12183424 gtaccaaatcgtttaccaagtaataaagtgataagtacagtatcgtatccacatggattgtcattt 12183359  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 23645860 - 23645811
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  23645860 gtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatcc 23645811  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 9838380 - 9838428
Alignment:
Q  199 agtaataaagtg-taagtagagtattgtatcctcaggggttgtcatttt 246  Q
    |||||||||||| ||||||||||||||||||| || || ||||||||||    
T  9838380 agtaataaagtgataagtagagtattgtatccacatggattgtcatttt 9838428  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 218
Target Start/End: Complemental strand, 12557824 - 12557764
Alignment:
Q  158 gtgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtaga 218  Q
    ||||||||| |||||||| | | |||||||||| |||  ||||||||||||||||||||||    
T  12557824 gtgatggtcggatttaggcaagtgtaccaaatcttttaccaagtaataaagtgtaagtaga 12557764  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 17349363 - 17349411
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    |||| |||||||||  |||||||||||||||||||||||||| ||||||    
T  17349363 gtactaaatcgtttaccaagtaataaagtgtaagtagagtatcgtatcc 17349411  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 8447164 - 8447094
Alignment:
Q  159 tgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtagagtattgtatcc 229  Q
    ||||||||  ||||||| | | ||||||||||||||  ||||||||||||| |||||||| ||| ||||||    
T  8447164 tgatggtcgaatttaggcaagtgtaccaaatcgtttaccaagtaataaagtataagtagattatcgtatcc 8447094  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 27909212 - 27909154
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcctcaggggtt 238  Q
    ||||||||||||||  |||||||||||||| |||||||||||| |||||| || |||||    
T  27909212 gtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatccacatgggtt 27909154  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 17743569 - 17743520
Alignment:
Q  181 gtaccaaatcgtttgacaagtaataaagtg-taagtagagtattgtatcc 229  Q
    ||||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  17743569 gtaccaaatcgtttaccaagtaataaagtgataagtagagtatcgtatcc 17743520  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 23011839 - 23011790
Alignment:
Q  197 caagtaataaagtgtaagtagagtattgtatcctcaggggttgtcatttt 246  Q
    |||||||||||||||||||||| |||||||||| || || ||||| ||||    
T  23011839 caagtaataaagtgtaagtagattattgtatccacaaggattgtcgtttt 23011790  T

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Target: scaffold0394 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 14022 - 13963
Alignment:
Q  159 tgatggtcagatttaggtatgggtaccaaatcgtttgacaagtaataaagtgtaagtaga 218  Q
    ||||||||||||||||| | | ||| ||||||||||  |||||||| |||||||||||||    
T  14022 tgatggtcagatttaggcaagtgtatcaaatcgtttaccaagtaattaagtgtaagtaga 13963  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 89942 - 89905
Alignment:
Q  185 caaatcgtttgacaagtaataaagtgtaagtagagtat 222  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  89942 caaatcgtttaccaagtaataaagtgtaagtagagtat 89905  T

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Target: scaffold0957 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 3175 - 3223
Alignment:
Q  197 caagtaataaagtgtaagtagagtattgtatcctcaggggttgtcattt 245  Q
    |||||||||||||||| ||||||||| |||||| || || |||||||||    
T  3175 caagtaataaagtgtatgtagagtatcgtatccacacggattgtcattt 3223  T

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