View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15461_low_2 (Length: 866)
Name: NF15461_low_2
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15461_low_2 |
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| [»] scaffold0727 (6 HSPs) |
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Alignment Details
Target: scaffold0727 (Bit Score: 177; Significance: 6e-95; HSPs: 6)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 306 - 482
Target Start/End: Original strand, 3966 - 4142
Alignment:
| Q |
306 |
tttattgcaattccaaagtattaaaaactatttaaatgaagtaagcataccatcaaatgttttaaattataaactgatcaaataatatgactgcaatttt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3966 |
tttattgcaattccaaagtattaaaaactatttaaatgaagtaagcataccatcaaatgttttaaattataaactgatcaaataatatgactgcaatttt |
4065 |
T |
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| Q |
406 |
caagtttgtgtatgctatgacattttttatttctctatttcttgctctagttcatgtcgatggtaagccatttctca |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4066 |
caagtttgtgtatgctatgacattttttatttctctatttcttgctctagttcatgtcgatggtaagccatttctca |
4142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 549 - 751
Target Start/End: Original strand, 4209 - 4410
Alignment:
| Q |
549 |
aatagcatttggtggtctttgtgtatctgatgctgcttgtccacaacttttttgttctcctaaaattgcgaagtgtannnnnnncgattgtcactgtgtt |
648 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
4209 |
aatagcatttggtggtctttgtgtaactgatgctgcttgtccacaacttttttgttctcctaaaactgcgaagtgtatttttttcgattgtcactgtgtt |
4308 |
T |
|
| Q |
649 |
tgacaggtattttgnnnnnnnntaattctttgttacctctaggattagctataattcccatcacatgttattacttgtatgatgtttctcatattatata |
748 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4309 |
tgacaggtattttg-aaaaaaataattctttgttacctctaggattagctataattcccatcacatgttattacttgtatgatgtgtctcatattatata |
4407 |
T |
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| Q |
749 |
tat |
751 |
Q |
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||| |
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| T |
4408 |
tat |
4410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727; HSP #3
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 3826 - 3941
Alignment:
| Q |
194 |
gaatttttaatacaatcaattaatttctatagttagatccattcaaaggtcaagtaactaattatttgagctaaagggacaaacataacatatcattgta |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
3826 |
gaatttttaatacaatcaattaatttctatagttagatccattcaaaggtcaagtaactaattatttgagctaaagggacaaacatgacataccattgta |
3925 |
T |
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| Q |
294 |
ctttggatacatttta |
309 |
Q |
| |
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|||||||||||||||| |
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| T |
3926 |
ctttggatacatttta |
3941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 743 - 849
Target Start/End: Original strand, 4440 - 4546
Alignment:
| Q |
743 |
tatatatatttatctaacattttcaatttatttgatagcattagacatgtgttaattgttttattcaagtcttagcaatacactaatgtgacttaaatgc |
842 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4440 |
tatatatatttatctaacattttcaatttatttgatagcattagacatgtgttaattgttttattcaagtcttagcaatacactaatgtgacttaaatgc |
4539 |
T |
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| Q |
843 |
ttgatat |
849 |
Q |
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||||||| |
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| T |
4540 |
ttgatat |
4546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 3700 - 3790
Alignment:
| Q |
73 |
ctccttattgtatggaacgctagatcaaaaataaaaagctattatttctct----tgtgtttattcctccatattctatgaaaggctagat |
159 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||||||||| |||| |||||||||||||||||||| |
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| T |
3700 |
ctccttattgtatggaacgctagataaaaaataaaaaactatcatttctcttttgtgtgtttatttctccgtattctatgaaaggctagat |
3790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 3630 - 3668
Alignment:
| Q |
22 |
ttattgttgtattatttctgcggctaagtttgtcatcat |
60 |
Q |
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| T |
3630 |
ttattgttgtattatttctgcggctaagtttttcatcat |
3668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 6e-95; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 306 - 482
Target Start/End: Original strand, 23551831 - 23552007
Alignment:
| Q |
306 |
tttattgcaattccaaagtattaaaaactatttaaatgaagtaagcataccatcaaatgttttaaattataaactgatcaaataatatgactgcaatttt |
405 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23551831 |
tttattgcaattccaaagtattaaaaactatttaaatgaagtaagcataccatcaaatgttttaaattataaactgatcaaataatatgactgcaatttt |
23551930 |
T |
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| Q |
406 |
caagtttgtgtatgctatgacattttttatttctctatttcttgctctagttcatgtcgatggtaagccatttctca |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23551931 |
caagtttgtgtatgctatgacattttttatttctctatttcttgctctagttcatgtcgatggtaagccatttctca |
23552007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 549 - 740
Target Start/End: Original strand, 23552074 - 23552264
Alignment:
| Q |
549 |
aatagcatttggtggtctttgtgtatctgatgctgcttgtccacaacttttttgttctcctaaaattgcgaagtgtannnnnnncgattgtcactgtgtt |
648 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
23552074 |
aatagcatttggtggtctttgtgtaactgatgctgcttgtccacaacttttttgttctcctaaaactgcgaagtgtatttttttcgattgtcactgtgtt |
23552173 |
T |
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| Q |
649 |
tgacaggtattttgnnnnnnnntaattctttgttacctctaggattagctataattcccatcacatgttattacttgtatgatgtttctcat |
740 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23552174 |
tgacaggtattttg-aaaaaaataattctttgttacctctaggattagctataattcccatcacatgttattacttgtatgatgtgtctcat |
23552264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 23551691 - 23551806
Alignment:
| Q |
194 |
gaatttttaatacaatcaattaatttctatagttagatccattcaaaggtcaagtaactaattatttgagctaaagggacaaacataacatatcattgta |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
23551691 |
gaatttttaatacaatcaattaatttctatagttagatccattcaaaggtcaagtaactaattatttgagctaaagggacaaacatgacataccattgta |
23551790 |
T |
|
| Q |
294 |
ctttggatacatttta |
309 |
Q |
| |
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|||||||||||||||| |
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| T |
23551791 |
ctttggatacatttta |
23551806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 743 - 849
Target Start/End: Original strand, 23552319 - 23552425
Alignment:
| Q |
743 |
tatatatatttatctaacattttcaatttatttgatagcattagacatgtgttaattgttttattcaagtcttagcaatacactaatgtgacttaaatgc |
842 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23552319 |
tatatatatttatctaacattttcaatttatttgatagcattagacatgtgttaattgttttattcaagtcttagcaatacactaatgtgacttaaatgc |
23552418 |
T |
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| Q |
843 |
ttgatat |
849 |
Q |
| |
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||||||| |
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|
| T |
23552419 |
ttgatat |
23552425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 23551565 - 23551655
Alignment:
| Q |
73 |
ctccttattgtatggaacgctagatcaaaaataaaaagctattatttctct----tgtgtttattcctccatattctatgaaaggctagat |
159 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||||||||| |||| |||||||||||||||||||| |
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| T |
23551565 |
ctccttattgtatggaacgctagataaaaaataaaaaactatcatttctcttttgtgtgtttatttctccgtattctatgaaaggctagat |
23551655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 23551495 - 23551533
Alignment:
| Q |
22 |
ttattgttgtattatttctgcggctaagtttgtcatcat |
60 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |
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| T |
23551495 |
ttattgttgtattatttctgcggctaagtttttcatcat |
23551533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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