View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15461_low_22 (Length: 202)
Name: NF15461_low_22
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15461_low_22 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 192366 - 192263
Alignment:
| Q |
83 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcaggtatatacaaacaaaaatattaaccatgcccggtattttatttaaagggacgtcc |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
192366 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcaggtacatacaaacaaaaatattaaccatgcccagtattttatttaaagggacgtcc |
192267 |
T |
|
| Q |
183 |
tgtg |
186 |
Q |
| |
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|||| |
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| T |
192266 |
tgtg |
192263 |
T |
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Target: chr6 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 11015943 - 11015842
Alignment:
| Q |
83 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcaggtatatacaaacaaaaatattaaccatgcccggtattttatttaaagggacgtcc |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11015943 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcaggtacatacaaacaaaaatattaaccatgcccagtattttatttaaagggacgtcc |
11015844 |
T |
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| Q |
183 |
tg |
184 |
Q |
| |
|
|| |
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|
| T |
11015843 |
tg |
11015842 |
T |
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Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 28076776 - 28076679
Alignment:
| Q |
83 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcaggtatatacaaacaaaaatattaaccatgcccggtattttatttaaagggacgt |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28076776 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcaggtacatacaaacaaaaatattaaccatgcccaatattttatttaaagggacgt |
28076679 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 31049598 - 31049495
Alignment:
| Q |
83 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcaggtatatacaaacaaaaatattaaccatgcccggtattttatttaaagggacgtcc |
182 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31049598 |
gtacatagacgtaatcaactatctttatgttttaaattaagtcaggtacattcaaacaaaaatattaaccatgcccagtattttatttaaagggacgtct |
31049499 |
T |
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| Q |
183 |
tgtg |
186 |
Q |
| |
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|||| |
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| T |
31049498 |
tgtg |
31049495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 52867984 - 52868087
Alignment:
| Q |
83 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcaggtatatacaaacaaaaatattaaccatgcccggtattttatttaaagggacgtcc |
182 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52867984 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcacgtacatacaaacaaaaatattaaccatgcccagtattttatttaaagggacgtcc |
52868083 |
T |
|
| Q |
183 |
tgtg |
186 |
Q |
| |
|
|||| |
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|
| T |
52868084 |
tgtg |
52868087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 44157550 - 44157449
Alignment:
| Q |
83 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcaggtatatacaaacaaaaatattaaccatgcccggtattttatttaaagggacgtcc |
182 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
44157550 |
gtacgtagacgtaatcaactatttttatgttttaaattaagtcaggtacatacaaacaaaaatattaaccatgtccagtattttatttaaagggacgtcc |
44157451 |
T |
|
| Q |
183 |
tg |
184 |
Q |
| |
|
|| |
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|
| T |
44157450 |
tg |
44157449 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 34087316 - 34087213
Alignment:
| Q |
83 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcaggtatatacaaacaaaaatattaaccatgcccggtattttatttaaagggacgtcc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
34087316 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcaggtacatacaaacaaaaatattaaccatgcccaatattttatttaaatggacgtct |
34087217 |
T |
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| Q |
183 |
tgtg |
186 |
Q |
| |
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|||| |
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|
| T |
34087216 |
tgtg |
34087213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 42964178 - 42964075
Alignment:
| Q |
83 |
gtacgtagacgtaatcaactatctttatgttttaaattaagtcaggtatatacaaacaaaaatattaaccatgcccggtattttatttaaagggacgtcc |
182 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||||||||| || || ||||||||||||||||||||| | |
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| T |
42964178 |
gtacgtaggcgtaatcaactttctttatgttttaaattaagtgaggtacatacaatcaaaaatattaactatatccagtattttatttaaagggacgttc |
42964079 |
T |
|
| Q |
183 |
tgtg |
186 |
Q |
| |
|
|||| |
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|
| T |
42964078 |
tgtg |
42964075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 7884496 - 7884593
Alignment:
| Q |
87 |
gtagacgtaatcaactatctttatgttttaaattaagtcaggtatatacaaacaaaaatattaaccatgcccggtattttatttaaagggacgtcctg |
184 |
Q |
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|||||| ||||||||| ||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7884496 |
gtagacataatcaactttctttatattttaaattaagtcaagtacaaacaaacaaaaatattaaccatgcccagtattttatttaaagggacgtcctg |
7884593 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 42323413 - 42323493
Alignment:
| Q |
106 |
tttatgttttaaattaagtcaggtatatacaaacaaaaatattaaccatgcccggtattttatttaaagggacgtcctgtg |
186 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |
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| T |
42323413 |
tttatgttttaaattaagtcaggtacatacaaacaaaaatattaaccatgtccagtattttatttaaagggacgttctgtg |
42323493 |
T |
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