View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15461_low_3 (Length: 776)

Name: NF15461_low_3
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15461_low_3
NF15461_low_3
[»] chr4 (1 HSPs)
chr4 (18-762)||(47362513-47363257)


Alignment Details
Target: chr4 (Bit Score: 706; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 18 - 762
Target Start/End: Original strand, 47362513 - 47363257
Alignment:
Q  18 gattctgaggaaagtgttgttatcaaggagcttcagattcgtactgattctactgaattggccaagcttgaaagagattttaccggtgctgcagcaccgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47362513 gattctgaggaaagtgttgttatcaaggagcttcagattcgtactgattctactgaattggccaagcttgaaagagattttaccggtgctgcagcaccgg 47362612  T
Q  118 cttctgcggcttttcctcttcatgtagctaggtttgcattctctcagctttggaggcacattttgtttgttacgtttccgagggagttggttgtgtttga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47362613 cttctgcggcttttcctcttcatgtagctaggtttgcattctctcagctttggaggcacattttgtttgttacgtttccgagggagttggttgtgtttga 47362712  T
Q  218 tttgcagtacgagtgtgtgatctttgcatcgtcgttgcctcgtggttgtggcaagtttttagatgtgttgcctgatcctagtaacgagtggatctactgt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  47362713 tttgcagtacgagtgtgtgatctttgcatcgtcgttgcctcgtggttgtggcaagtttttagatgttttgcccgatcctagtaacgagtggatctactgt 47362812  T
Q  318 gctcatgttgatggcaagcttagcacctggaagaggaaaccgtaagtgtttcttgtcttagaattttcttatattcagacattcggatgatttttctatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47362813 gctcatgttgatggcaagcttagcacctggaagaggaaaccgtaagtgtttcttgtcttagaattttcttatattcagacattcggatgatttttctatc 47362912  T
Q  418 aatatcacacacattgtcaaatacagtctagtgattgatagtttcatatatacttgtgatagagtgatataatgatgcttaaataactcgtatatgctgg 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47362913 aatatcacacacattgtcaaatacagtctagtgattgatagtttcatatatacttgtgatagagtgatataatgatgcttaaataactcgtatatgctgg 47363012  T
Q  518 cagaatctgttgattgtaactagaagctttctcttttatatattaaatctattattgctacttttgtttgtcaaatttttggttattgcaagtatttgcg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47363013 cagaatctgttgattgtaactagaagctttctcttttatatattaaatctattattgctacttttgtttgtcaaatttttggttattgcaagtatttgcg 47363112  T
Q  618 tgtttgataaacgtgtatgatgatactgaaatttgatgtgagtttgtcc-ttatatgaattatcttcccttgctcccaagaactgaattttttaagttag 716  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || |||||    
T  47363113 tgtttgataaacgtgtatgatgatactgaaatttgacgtgagtttgtcctttatatgaattatcttcccttgctcccaagaactgaa-tttctacgttag 47363211  T
Q  717 gtggacaaaagatgaatgttcagaggaggagattgtatacgtgatg 762  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  47363212 gtggacaaatgatgaatgttcagaggaggagattgtatacgtgatg 47363257  T

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