View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15461_low_4 (Length: 615)
Name: NF15461_low_4
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15461_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 36457632 - 36457924
Alignment:
| Q |
1 |
catctgctgcagcataatgtgtctttatggggagtgaaaaacaaaaggctcgctcggtctgttgttgtggtgagcggttgtttgatctctatggattgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36457632 |
catctgctgcagcataatgtgtctttatggggagtgaaaaacaaaaggctcgctcggtctgttgttgtggtgagcggttgtttggtctctatggattgct |
36457731 |
T |
|
| Q |
101 |
agaaataatataatttttatggacagtattcctaatgtgttcaatctcttagttggaaatggatgtcatcgaaaataggtagcagaccgaaaatgacatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36457732 |
agaaataatataatttttatggacagtattcctaatgtgttcaatctcttagttggaaatgaatgtcgtcgaaaataggtagcagaccgaaaatgacatt |
36457831 |
T |
|
| Q |
201 |
ctgcggctggagtttatgctatttagaatgttatagaagttgaacattgtgtattggggttgagtacctcatgtactcatttgcatcttattt |
293 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
36457832 |
ctctggctggagtttatgctatttagaatgttataaaagttgaacattgtgtattggggttgagtaccttatgtactcatatgcatcttattt |
36457924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 294 - 615
Target Start/End: Original strand, 36458064 - 36458367
Alignment:
| Q |
294 |
ttattttgaattagagcttgctataaattatttctatcacctaggaggagtatgccattggttggataataggctttcactttatgtggctctctatttc |
393 |
Q |
| |
|
|||||| || ||||||||| ||| |||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458064 |
ttatttcgacttagagctt-ctacaaattacttgtatcacctaggaggagcatgccattggttggataataggctttcactttatgtggctctctatttc |
36458162 |
T |
|
| Q |
394 |
attcaagtttctaattcatgataagctttagagaaactaaagtagtaatatagacattaaagtaataacgttgattccaaaacaaagaataccaatatat |
493 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458163 |
a-----------------tgataagctttagagaaactaaagtagtaatatagacattaaagtaataacgttgattccaaaacaaagaataccaatatat |
36458245 |
T |
|
| Q |
494 |
ttttacaattttctttttctaatcctaaactgtcacttctaaaccaaataacacccctgcgtgcatagtgattccattgttgacaaaataaatgtccttc |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458246 |
ttttacaattttctttttctaatcctaaactgtcacttctaacccaaataacacccctgcgtgcatagtgattccattgttgacaaaataaatgtccttc |
36458345 |
T |
|
| Q |
594 |
atcttcttaaaagcttgccatg |
615 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
36458346 |
atcttcttaaaagcttgccatg |
36458367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 11628456 - 11628377
Alignment:
| Q |
60 |
tgttgttgtggtgagcggttgtttgatctctatggattgctagaaataatataatttttatggacagtattcctaatgtg |
139 |
Q |
| |
|
||||||||| | ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
11628456 |
tgttgttgttgggagaggttgtttggtctctatatattgctagaaataatataatttttatggacaatatttctaatgtg |
11628377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University