View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15461_low_5 (Length: 615)

Name: NF15461_low_5
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15461_low_5
NF15461_low_5
[»] chr4 (19 HSPs)
chr4 (2-615)||(25643585-25644197)
chr4 (158-575)||(20317305-20317716)
chr4 (167-606)||(22345163-22345594)
chr4 (36-160)||(20316731-20316855)
chr4 (176-442)||(22218147-22218414)
chr4 (35-157)||(22217559-22217681)
chr4 (17-160)||(17661375-17661517)
chr4 (244-451)||(48641023-48641231)
chr4 (13-160)||(7613137-7613284)
chr4 (325-438)||(10107305-10107418)
chr4 (478-549)||(11521043-11521114)
chr4 (358-501)||(7611466-7611604)
chr4 (462-529)||(10107224-10107292)
chr4 (478-549)||(9737359-9737430)
chr4 (478-549)||(19900757-19900828)
chr4 (163-209)||(22526727-22526773)
chr4 (35-100)||(17380479-17380544)
chr4 (52-105)||(18447999-18448052)
chr4 (409-437)||(12286320-12286348)
[»] chr1 (16 HSPs)
chr1 (163-615)||(24306488-24306930)
chr1 (165-379)||(25264237-25264452)
chr1 (334-549)||(17017423-17017634)
chr1 (163-247)||(8986516-8986600)
chr1 (278-388)||(10064245-10064353)
chr1 (462-549)||(33712857-33712944)
chr1 (35-160)||(27910287-27910411)
chr1 (463-501)||(15053071-15053109)
chr1 (17-143)||(34104321-34104449)
chr1 (83-160)||(20033735-20033812)
chr1 (67-157)||(26581025-26581117)
chr1 (35-111)||(10828058-10828134)
chr1 (278-388)||(15053173-15053282)
chr1 (477-549)||(24267630-24267702)
chr1 (331-429)||(13134853-13134951)
chr1 (41-160)||(25264899-25265020)
[»] chr2 (22 HSPs)
chr2 (164-549)||(25937112-25937491)
chr2 (165-570)||(12557234-12557629)
chr2 (182-308)||(29883582-29883708)
chr2 (35-160)||(12556698-12556825)
chr2 (8-156)||(8446055-8446203)
chr2 (294-445)||(18539627-18539778)
chr2 (164-501)||(18545431-18545761)
chr2 (401-613)||(25070251-25070456)
chr2 (35-160)||(25938000-25938125)
chr2 (188-367)||(18553466-18553643)
chr2 (325-550)||(18932408-18932618)
chr2 (465-568)||(29883412-29883515)
chr2 (462-572)||(8446879-8446989)
chr2 (42-160)||(31427187-31427305)
chr2 (35-160)||(34368759-34368882)
chr2 (474-549)||(27869876-27869951)
chr2 (242-388)||(30695100-30695245)
chr2 (462-517)||(30695274-30695329)
chr2 (478-549)||(45621731-45621802)
chr2 (33-160)||(27870692-27870821)
chr2 (54-160)||(8502060-8502170)
chr2 (34-160)||(31433527-31433656)
[»] chr8 (14 HSPs)
chr8 (163-549)||(26008232-26008614)
chr8 (35-160)||(26009064-26009189)
chr8 (462-615)||(17972286-17972441)
chr8 (36-159)||(24114793-24114918)
chr8 (340-487)||(14006348-14006489)
chr8 (35-160)||(26614290-26614415)
chr8 (124-160)||(17973172-17973208)
chr8 (87-160)||(18829567-18829642)
chr8 (325-437)||(24119466-24119578)
chr8 (278-438)||(17972454-17972611)
chr8 (35-75)||(45264410-45264450)
chr8 (178-374)||(45265153-45265344)
chr8 (50-105)||(5856214-5856269)
chr8 (462-549)||(12268948-12269035)
[»] chr7 (32 HSPs)
chr7 (159-510)||(2504394-2504737)
chr7 (35-160)||(23008019-23008144)
chr7 (330-501)||(4258600-4258765)
chr7 (13-160)||(2505242-2505389)
chr7 (244-430)||(2454041-2454225)
chr7 (34-160)||(26133756-26133884)
chr7 (255-387)||(15303243-15303375)
chr7 (489-574)||(21227342-21227428)
chr7 (185-295)||(26134370-26134480)
chr7 (483-575)||(19398665-19398758)
chr7 (83-160)||(24751838-24751915)
chr7 (35-160)||(10414629-10414756)
chr7 (477-615)||(9890296-9890435)
chr7 (463-549)||(2953763-2953847)
chr7 (35-158)||(8158397-8158522)
chr7 (299-436)||(18466287-18466424)
chr7 (334-435)||(21884872-21884973)
chr7 (283-435)||(21912145-21912297)
chr7 (359-501)||(8937976-8938113)
chr7 (489-568)||(23587790-23587870)
chr7 (464-550)||(9062981-9063067)
chr7 (51-129)||(9863310-9863388)
chr7 (337-430)||(9916813-9916906)
chr7 (337-430)||(9924725-9924818)
chr7 (462-533)||(2453950-2454021)
chr7 (337-435)||(13707766-13707865)
chr7 (478-533)||(16223989-16224044)
chr7 (163-209)||(10480376-10480422)
chr7 (482-595)||(21102126-21102240)
chr7 (53-155)||(4900934-4901038)
chr7 (535-615)||(2504300-2504380)
chr7 (51-136)||(5485057-5485144)
[»] chr5 (22 HSPs)
chr5 (163-482)||(28278699-28279010)
chr5 (218-601)||(25922438-25922819)
chr5 (181-385)||(23379807-23380011)
chr5 (33-141)||(25934012-25934122)
chr5 (50-160)||(20533070-20533180)
chr5 (482-595)||(32417200-32417314)
chr5 (199-317)||(27921055-27921174)
chr5 (321-430)||(20533745-20533854)
chr5 (35-140)||(28279720-28279825)
chr5 (381-436)||(18223299-18223354)
chr5 (334-435)||(15544332-15544434)
chr5 (37-160)||(17831100-17831225)
chr5 (13-160)||(17336804-17336949)
chr5 (489-575)||(27921254-27921341)
chr5 (331-388)||(17337558-17337615)
chr5 (50-160)||(26252883-26252997)
chr5 (332-388)||(28253619-28253675)
chr5 (178-209)||(15492504-15492535)
chr5 (278-388)||(112286-112395)
chr5 (489-559)||(15470107-15470177)
chr5 (67-129)||(19762195-19762257)
chr5 (519-574)||(23014477-23014533)
[»] chr3 (11 HSPs)
chr3 (320-575)||(27542602-27542851)
chr3 (33-160)||(18473555-18473682)
chr3 (182-317)||(29755941-29756076)
chr3 (188-305)||(20339446-20339563)
chr3 (462-568)||(25756834-25756939)
chr3 (83-159)||(21018959-21019037)
chr3 (35-160)||(51119050-51119175)
chr3 (482-575)||(21083425-21083519)
chr3 (451-501)||(20339619-20339669)
chr3 (168-209)||(25757176-25757217)
chr3 (405-433)||(21083560-21083588)
[»] chr6 (19 HSPs)
chr6 (158-326)||(26214999-26215167)
chr6 (474-575)||(33655719-33655820)
chr6 (278-429)||(24187887-24188038)
chr6 (163-317)||(20404299-20404452)
chr6 (462-550)||(9386242-9386330)
chr6 (183-308)||(33655518-33655643)
chr6 (251-446)||(34478810-34479000)
chr6 (50-160)||(10821616-10821728)
chr6 (35-160)||(26214413-26214540)
chr6 (44-160)||(9387065-9387183)
chr6 (52-160)||(10504589-10504699)
chr6 (35-160)||(14882353-14882481)
chr6 (463-508)||(20404510-20404555)
chr6 (325-401)||(15613859-15613935)
chr6 (350-430)||(21547206-21547286)
chr6 (320-436)||(28585731-28585847)
chr6 (325-438)||(9386343-9386455)
chr6 (334-435)||(23088053-23088153)
chr6 (83-160)||(32759448-32759527)
[»] scaffold0016 (1 HSPs)
scaffold0016 (181-385)||(12454-12658)
[»] scaffold1017 (2 HSPs)
scaffold1017 (278-437)||(2911-3069)
scaffold1017 (462-534)||(2825-2897)
[»] scaffold0085 (2 HSPs)
scaffold0085 (325-550)||(22407-22621)
scaffold0085 (124-160)||(23426-23462)
[»] scaffold0032 (1 HSPs)
scaffold0032 (277-361)||(71277-71361)
[»] scaffold0394 (2 HSPs)
scaffold0394 (279-427)||(13571-13718)
scaffold0394 (483-539)||(13763-13818)


Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 2 - 615
Target Start/End: Complemental strand, 25644197 - 25643585
Alignment:
Q  2 ttttaaggcctaaacccaggcggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagc 101  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  25644197 ttttaaggcccaaacccaggtggaaatcaaacttataaatacaactcatctcattcataattttgcattcataatgaaactgatcaagaggaatgcaagc 25644098  T
Q  102 actatgaactgcaagggaggaatctctcctcactctaagtctttagggtatgttttattatgaaccctaatttacgtctttgtttcaattacctctaaga 201  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25644097 actatgaaccgcaagggaggaatctctcctcactctaagtctttagggtatgttttattatgaaccctaatttacgtctttgtttcaattacctctgaga 25643998  T
Q  202 gagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtagaaactctggtgtaaggttgc 301  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  25643997 gagtaagaaccccacatacatctacgtgcgaaggt-catttccctataggattgacgaccttaagcattgacatgcgtagaaactctggtgtaaggttgc 25643899  T
Q  302 aactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatag 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25643898 aactcgatagttggagcagaataaacccagacctctgagagagtaaggccccatacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatag 25643799  T
Q  402 aaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaata 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||| |||||||||||||    
T  25643798 aaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaatcaatatctgaataatgtttgacaattaattaattccaacaaatgaata 25643699  T
Q  502 taggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgctctgggcgaatagattaaattgcaaaaccc 601  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||     
T  25643698 taggggactcgaagaaccctaaccactgctaatattctgcaataaaaaatggtttcttataaactctcgttctgagcgaatagattaaattgcaaaaccg 25643599  T
Q  602 ccttttatctttta 615  Q
    ||||||||||||||    
T  25643598 ccttttatctttta 25643585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 158 - 575
Target Start/End: Original strand, 20317305 - 20317716
Alignment:
Q  158 attatgaaccctaatttacgtctttgtttcaattacctctaagagagtaagaacccca-catacatctacgtgcgaaggtgcatttccctataggattga 256  Q
    ||||||||||||||| | |||| |||||| || |||||   ||||||||| ||| | | | ||  |||| ||||||| |||||| |||||| | ||||||    
T  20317305 attatgaaccctaatatccgtcattgttttaaataccttcgagagagtaaaaactcaaacgtatctctatgtgcgaaagtgcatctccctacatgattga 20317404  T
Q  257 cgaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccaca 356  Q
    |  || ||| || ||||||  ||||||| |||||||||| |||||||||||| || ||| |  ||||||||||| | ||||| || || |||||||||||    
T  20317405 cagccctaaacactaacctatgtagaaaatctggtgtaatgttgcaactcgaaagctggtgtggaataaacccatagctctgggaaagaaaggccccaca 20317504  T
Q  357 cgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaa 456  Q
    |||||||||  ||||||| |||  ||||||||  ||||||  ||| |||||||||||||| ||||||||| ||| ||| ||| |||||||  |           
T  20317505 cgtacaaacttgtgtgatcagtttgtgcaacttgacagctggtaggaaataaaaccccacgaactcatcaattagatataagacgtaaaatga------- 20317597  T
Q  457 tatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaat-aaaaaatggtt 555  Q
     ||| ||||||||||||| |||||||||||| || |||||| |||||||||||| |||||| | ||||   | ||||||||||||||| |||||| | ||    
T  20317598 -atctgaataatgcttgatcattaattaattccagcaaatggatataggggacttgaagaatcttaactgacactaatattctgcaatcaaaaaaggttt 20317696  T
Q  556 acttctaaactctcgctctg 575  Q
    ||| ||||||||||||||||    
T  20317697 actcctaaactctcgctctg 20317716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 167 - 606
Target Start/End: Complemental strand, 22345594 - 22345163
Alignment:
Q  167 cctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttc-cctataggattgacgaccttaa 265  Q
    |||||||||  |||||||||||||||||||| |||||||||||||| ||  |||  ||||  |||||||||  | || ||||||||||||| |||| |||    
T  22345594 cctaatttaaatctttgtttcaattacctctgagagagtaagaaccacatgtaccactactcgcgaaggtg--tgtcgcctataggattgaggaccctaa 22345497  T
Q  266 gcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaac 365  Q
    ||||| |||  |||||||||||  ||||||||||||||||| | |  | |||  ||||||||||| |||| ||||| ||||||||||||||| |||||||    
T  22345496 gcattgacccacgtagaaactcatgtgtaaggttgcaactcaacatctagaggggaataaacccaaacctttgagaaagtaaggccccacac-tacaaac 22345398  T
Q  366 ccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaat 465  Q
       |||||| || ||||||||||||| ||||  ||  ||||||||| |||  ||||||||||||||||||||| ||      |||| |||||||| ||      
T  22345397 gaatgtgatcagcaggtgcaactcaatagctggtaagaaataaaactccatgaactcatcacttaaatagaagacg------taaatccaatatctgagc 22345304  T
Q  466 aatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaac 565  Q
     || | |||||||||||| ||| |||||||| ||||  ||||| | ||||||| |||||| |||| ||  |||  |||| || |   ||| || ||||||    
T  22345303 tatccctgaccattaatttattgcaacaaataaatagtggggattggaagaactctaaccgccgcgaactttcgtcaatcaatacatgttgctcctaaac 22345204  T
Q  566 tctcgctctgggcgaatagattaaattgcaaaacccccttt 606  Q
    ||| || ||| || |||| | ||||||||||||||||||||    
T  22345203 tcttgcactgtgcaaataaaataaattgcaaaacccccttt 22345163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 20316731 - 20316855
Alignment:
Q  36 ataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcact 135  Q
    |||||||||||||||||||||||||||||| |||||||||||||   ||||||| |||| ||||| |||| ||||| |||||||| | ||||||||||||    
T  20316731 ataaatacaactcatctcattcataatttttcattcagaatgaagtggttcaagcggaaggcaaggactaggaacttcaagggagaagtctctcctcact 20316830  T
Q  136 ctaagtctttagggtatgttttatt 160  Q
    |||||||| |||||||| |||||||    
T  20316831 ctaagtctctagggtatcttttatt 20316855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 176 - 442
Target Start/End: Original strand, 22218147 - 22218414
Alignment:
Q  176 cgtctttgtttcaattacctctaagagagtaagaacccc-acatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacc 274  Q
    |||| ||||||||| || |||| ||||||| ||||| |  |||||| |||||| ||||| ||| || | |||| ||| ||||| | | |||  | |||||    
T  22218147 cgtcattgtttcaaatatctctgagagagttagaactcatacatacctctacgcgcgaaagtgtatcttcctacaggtttgacaatcataaagactaacc 22218246  T
Q  275 tgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgat 374  Q
     | |||||||||  |||||||||||||||||| |||  |||||  |||||||| || |||| |||||||||||||| |||||||||||||||||||||||    
T  22218247 agtgtagaaacttcggtgtaaggttgcaactccatatctggaggggaataaactcatacctttgagagagtaaggctccacacgtacaaacccgtgtgat 22218346  T
Q  375 aagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgt 442  Q
     ||||||||||| | ||||  |  ||| |||||||||| ||  ||||||||||||| |||||| ||||    
T  22218347 cagtaggtgcaagttaacaattggtaggaaataaaaccacatgaactcatcacttagatagaactcgt 22218414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 22217559 - 22217681
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 134  Q
    |||||||||||||| |||||||||||||||| |||||| ||  ||   |||||||||||| | ||||||||||| ||  ||||||||| |||||||||||    
T  22217559 tataaatacaactcctctcattcataatttttcattcaaaacaaagtggttcaagaggaaggtaagcactatgagcttaaagggaggagtctctcctcac 22217658  T
Q  135 tctaagtctttagggtatgtttt 157  Q
    ||||||||| |||||||| ||||    
T  22217659 tctaagtctctagggtatttttt 22217681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 17661517 - 17661375
Alignment:
Q  17 ccaggcggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaag 116  Q
    ||||| ||||| ||| | |||||||||||||  ||||||||| |||||| |||| |||| |||    ||||||||||| |||||||||| || || ||||    
T  17661517 ccaggtggaaaccaagcctataaatacaacttctctcattcagaatttttcatttagaacgaattgattcaagaggaaagcaagcacta-gatcttcaag 17661419  T
Q  117 ggaggaatctctcctcactctaagtctttagggtatgttttatt 160  Q
    |||||| |||||||||||| ||||||| ||| ||||||||||||    
T  17661418 ggaggagtctctcctcactataagtctctagtgtatgttttatt 17661375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 244 - 451
Target Start/End: Complemental strand, 48641231 - 48641023
Alignment:
Q  244 cctataggattgacgaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagaga 343  Q
    |||| ||||||||||||| | | || ||||  | |||| |||||  |||||||||||||||| || |  || ||  |||||||| |||||||||||||||    
T  48641231 cctacaggattgacgacccttaacactaactcgtgtaggaactccagtgtaaggttgcaacttgacaactgaaggggaataaactcagacctctgagaga 48641132  T
Q  344 gtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaaccccacaaactcatcacttaaatagaagtcgt 442  Q
    |||| |||||| |||||||||   ||||||| |||||||| ||||| ||  ||  || || ||||||||||||| ||||||||||||| ||| |||  ||    
T  48641131 gtaaagccccaaacgtacaaaattgtgtgatcagtaggtgtaactcgacgactggtaggataataaaaccccacgaactcatcacttagataaaagatgt 48641032  T
Q  443 aaaaataaa 451  Q
    |||| ||||    
T  48641031 aaaattaaa 48641023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 7613284 - 7613137
Alignment:
Q  13 aaacccaggcggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactg 112  Q
    ||||||||| || || ||| | |||||||||||||  ||||||| |||||||| ||||| ||| ||     ||||| ||||||||||| |||| || ||     
T  7613284 aaacccaggtggtaaccaagcctataaatacaacttctctcattgataatttttcattctgaacgacgtgattcaaaaggaatgcaagaactaggagctt 7613185  T
Q  113 caagggaggaatctctcctcactctaagtctttagggtatgttttatt 160  Q
    ||||| |||  |||||||||||||||||||| ||||||||||||||||    
T  7613184 caaggaaggggtctctcctcactctaagtctctagggtatgttttatt 7613137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 325 - 438
Target Start/End: Complemental strand, 10107418 - 10107305
Alignment:
Q  325 aacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcat 424  Q
    |||||| |||||| |||||||||| ||| | ||||||||||| ||||||| |||||||||||||  | |||   |||  | ||||||||||| |||||||    
T  10107418 aacccaaacctctaagagagtaagaccctaaacgtacaaacctgtgtgattagtaggtgcaacttgatagcctgtaggtagtaaaaccccacgaactcat 10107319  T
Q  425 cacttaaatagaag 438  Q
    |||||| |||||||    
T  10107318 cacttagatagaag 10107305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 549
Target Start/End: Original strand, 11521043 - 11521114
Alignment:
Q  478 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 549  Q
    |||||||||||||||||||||||| |||  | || ||||| ||||||||||||||| |||||||||| ||||    
T  11521043 ttaattaatttcaacaaatgaatagaggatattcaaagaatcctaaccaccgctaacattctgcaatcaaaa 11521114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 358 - 501
Target Start/End: Complemental strand, 7611604 - 7611466
Alignment:
Q  358 gtacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaa 456  Q
    |||||||| |||||||| |||||||||||||| ||||||  || || ||||||||||||| ||||||||||||  || | ||      | ||  ||||||    
T  7611604 gtacaaactcgtgtgatcagtaggtgcaactcgacagctggtaggataataaaaccccacgaactcatcacttttatgggag------acatttaaccaa 7611511  T
Q  457 tatcagaataatgcttgaccattaattaatttcaacaaatgaata 501  Q
    |  | ||||||| |||||||||||||||||| |||||||||||||    
T  7611510 tccctgaataatacttgaccattaattaattccaacaaatgaata 7611466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 529
Target Start/End: Complemental strand, 10107292 - 10107224
Alignment:
Q  462 gaataatgcttgaccatt-aattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccg 529  Q
    |||| ||||||||| ||| |||||||| ||||||||||||| |||||| |||||||| | |||||||||    
T  10107292 gaatgatgcttgacaatttaattaattccaacaaatgaatagaggggattcgaagaatcataaccaccg 10107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 549
Target Start/End: Original strand, 9737359 - 9737430
Alignment:
Q  478 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 549  Q
    |||||||||| ||||||||||||| |||  | || ||||| ||||||| ||||||| |||||||||| ||||    
T  9737359 ttaattaattccaacaaatgaatagaggacattcaaagaatcctaaccgccgctaacattctgcaatcaaaa 9737430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 549
Target Start/End: Complemental strand, 19900828 - 19900757
Alignment:
Q  478 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 549  Q
    |||| ||||| |||||||| |||||||||||  ||||||| ||||||| ||||||| ||| |||||| ||||    
T  19900828 ttaagtaattccaacaaataaatataggggatccgaagaatcctaacctccgctaacattatgcaatcaaaa 19900757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 22526773 - 22526727
Alignment:
Q  163 gaaccctaatttacgtctttgtttcaattacctctaagagagtaaga 209  Q
    |||| |||||||| || | ||||||||||||||||||||||||||||    
T  22526773 gaacgctaatttaagtgtatgtttcaattacctctaagagagtaaga 22526727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 17380544 - 17380479
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaag 100  Q
    |||||||||||||| ||||||||| || ||  |||| |||| ||| | ||||||||||||||||||    
T  17380544 tataaatacaactcctctcattcacaaattctcatttagaacgaagcggttcaagaggaatgcaag 17380479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 18447999 - 18448052
Alignment:
Q  52 tcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcacta 105  Q
    |||||||||||||  |||||||||||||   |||||||||||| ||||||||||    
T  18447999 tcattcataatttctcattcagaatgaagtggttcaagaggaaagcaagcacta 18448052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 437
Target Start/End: Complemental strand, 12286348 - 12286320
Alignment:
Q  409 aaccccacaaactcatcacttaaatagaa 437  Q
    |||||||||||||||||||||||||||||    
T  12286348 aaccccacaaactcatcacttaaatagaa 12286320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 181; Significance: 2e-97; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 163 - 615
Target Start/End: Original strand, 24306488 - 24306930
Alignment:
Q  163 gaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacct 262  Q
    ||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||| |  || || |    ||||||||| | ||||||||| ||||||||     
T  24306488 gaaccctaatttaggtcattgtttcaattacctctgagagactaagaaccccacctttatgtatg----aaggtgcatcttcctataggaatgacgaccc 24306583  T
Q  263 taagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtaca 362  Q
    ||| |||||||  || |||||||| | ||||||||||||||||| | || |||||  ||||||||| ||||||| |||||||||||||||||||||||||    
T  24306584 taaacattaactcgcatagaaacttttgtgtaaggttgcaactcaacagctggagtggaataaacctagacctccgagagagtaaggccccacacgtaca 24306683  T
Q  363 aacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcag 462  Q
    || ||||||||| |||||||||||||||||| || |||| |||||||||||||| ||||||||||||||| | |||||      |||||||||||||  |    
T  24306684 aatccgtgtgattagtaggtgcaactcaacaactgataggaaataaaaccccacgaactcatcacttaaacataagtc------ataaaaccaatatttg 24306777  T
Q  463 aataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttcta 562  Q
    ||||||| |||| ||||||||||||||||||||| ||||||||||| || ||||| |||||||  |||||| ||| | |||| ||||  |||||||||||    
T  24306778 aataatgtttgatcattaattaatttcaacaaattaatataggggattcaaagaatcctaaccgtcgctaacatttttcaatcaaaacaggttacttcta 24306877  T
Q  563 aactctcgctctgggcgaatagattaaattgcaaaacccccttttatctttta 615  Q
    |||||| |||||| || || ||| |||||||||||| || | |||||||||||    
T  24306878 aactcttgctctgtgcaaagagactaaattgcaaaaacctcctttatctttta 24306930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 165 - 379
Target Start/End: Complemental strand, 25264452 - 25264237
Alignment:
Q  165 accctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacctta 264  Q
    ||||||||||| ||||||||||||| ||||| |  |||||||||||| |||| ||||||||| ||| |||||||||  |  |||||||||||||||| ||    
T  25264452 accctaatttaagtctttgtttcaaatacctttgggagagtaagaactccacgtacatctacatgcaaaggtgcatcccattataggattgacgacccta 25264353  T
Q  265 agcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaat-aaacccagacctctgagagagtaaggccccacacgtacaa 363  Q
      |||| ||   || ||||||| ||||||||||||||||||||| ||||||||  |||| |||| || ||||||||| ||||||||||||| ||||||||    
T  25264352 tacattgacgcacgaagaaactttggtgtaaggttgcaactcgacagttggaggggaataaaactcatacctctgagtgagtaaggccccatacgtacaa 25264253  T
Q  364 acccgtgtgataagta 379  Q
    || | |||||| ||||    
T  25264252 actcatgtgattagta 25264237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 334 - 549
Target Start/End: Original strand, 17017423 - 17017634
Alignment:
Q  334 ctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaat 433  Q
    |||||||||| |||| ||||| ||||||||||||||||||| |||||  ||||||| || |||  ||| |||||||||||||| ||||| ||||||||||    
T  17017423 ctctgagagattaagtccccatacgtacaaacccgtgtgattagtagccgcaactcgactgctggtaggaaataaaaccccacgaactcgtcacttaaat 17017522  T
Q  434 agaagtcgtaaaaataaaaccaatatcagaataatgcttgaccatt--aattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgct 531  Q
    ||||| ||      ||||| ||||||| ||| |||||||||| |||   ||||| | |||||||| |||| |||||| |||||||||||| ||  || ||    
T  17017523 agaaggcg------taaaatcaatatctgaacaatgcttgactattgatattaaatccaacaaataaatagaggggattcgaagaacccttactgccact 17017616  T
Q  532 aatattctgcaataaaaa 549  Q
    || |||||||||| ||||    
T  17017617 aacattctgcaatcaaaa 17017634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 8986600 - 8986516
Alignment:
Q  163 gaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttcccta 247  Q
    ||||||||||||| |||| ||||||||||||||| |||| ||||| |||||||| |||||||| |||||||||||||| ||||||    
T  8986600 gaaccctaatttaagtctgtgtttcaattacctcaaagatagtaataaccccacgtacatctatgtgcgaaggtgcatctcccta 8986516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 278 - 388
Target Start/End: Original strand, 10064245 - 10064353
Alignment:
Q  278 gtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataag 377  Q
    |||||||||||| ||||||||||||||| || || | |||   ||| |||||| ||||||||||||| ||| ||||||||||||||||||||||||| ||    
T  10064245 gtagaaactctg-tgtaaggttgcaact-gacagctagagggaaatgaacccaaacctctgagagagcaagaccccacacgtacaaacccgtgtgatcag 10064342  T
Q  378 taggtgcaact 388  Q
    |||||| ||||    
T  10064343 taggtgtaact 10064353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 462 - 549
Target Start/End: Complemental strand, 33712944 - 33712857
Alignment:
Q  462 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 549  Q
    ||||||| ||||||||||||||| || ||| | ||||||| |||||| || |||||||||||||| |||||| |||||||||| ||||    
T  33712944 gaataatacttgaccattaattatttccaatagatgaatagaggggattcaaagaaccctaaccatcgctaacattctgcaatcaaaa 33712857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 27910411 - 27910287
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 134  Q
    |||||||||||||  |||||||||| |||||  ||| |||| |||   |||||||||||| |||| ||||  || || |||||||||| |||||||||||    
T  27910411 tataaatacaacttgtctcattcattattttt-attaagaacgaagtggttcaagaggaaggcaaacacttggagcttcaagggaggagtctctcctcac 27910313  T
Q  135 tctaagtctttagggtatgttttatt 160  Q
    | ||||||| || |||||||||||||    
T  27910312 tttaagtctctaaggtatgttttatt 27910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 463 - 501
Target Start/End: Complemental strand, 15053109 - 15053071
Alignment:
Q  463 aataatgcttgaccattaattaatttcaacaaatgaata 501  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15053109 aataatgcttgaccattaattaatttcaacaaatgaata 15053071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 34104449 - 34104321
Alignment:
Q  17 ccaggcggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaac-tgttcaagaggaatgcaagcactatgaactgcaa 115  Q
    ||||| |||||  |||| |||||||| |||| ||||||||||| ||||| ||||||||| ||||| |||||| |||||| || ||||||| || || |||    
T  34104449 ccaggtggaaacaaaacctataaatagaacttatctcattcat-atttttcattcagaacgaaacttgttcatgaggaaggccagcactaggagcttcaa 34104351  T
Q  116 gggagga--atctctcctcactctaagtct 143  Q
     ||||||   ||||||||||||||||||||    
T  34104350 cggaggactctctctcctcactctaagtct 34104321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 20033735 - 20033812
Alignment:
Q  83 gttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcactctaagtctttagggtatgttttatt 160  Q
    |||||||||||| |||| || || || || |||||||||| ||||  |||||||||||||| ||||||||||||||||    
T  20033735 gttcaagaggaaggcaaccattaggagcttcaagggaggagtctcctctcactctaagtctctagggtatgttttatt 20033812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 26581117 - 26581025
Alignment:
Q  67 cattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcctcactctaagtctttagggtatgtttt 157  Q
    |||||||||| || | |||||||||||| |||||||||| || || ||||||| || ||  |||||||| ||||||||| |||||||||||||    
T  26581117 cattcagaataaagcggttcaagaggaaggcaagcactaggagcttcaagggatgagtctttctcctcaatctaagtctctagggtatgtttt 26581025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 10828134 - 10828058
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaact 111  Q
    |||||||||||||| ||||||||| |||| | |||||| ||||||   ||||||||||||||||| ||||| |||||    
T  10828134 tataaatacaactcctctcattcaaaattattcattcataatgaagtagttcaagaggaatgcaaacactaggaact 10828058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 388
Target Start/End: Complemental strand, 15053282 - 15053173
Alignment:
Q  278 gtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataag 377  Q
    |||||||||| |||||||| |||||||| || || |||||   ||| ||| || ||||||||||||||||| | | |||||||||||||| |||||| |     
T  15053282 gtagaaactccggtgtaagattgcaact-gacaggtggaggtcaatgaactcaaacctctgagagagtaagactctacacgtacaaacccatgtgatcaa 15053184  T
Q  378 taggtgcaact 388  Q
    ||| |||||||    
T  15053183 tagttgcaact 15053173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 477 - 549
Target Start/End: Original strand, 24267630 - 24267702
Alignment:
Q  477 attaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 549  Q
    ||||||||||| |||||||| |||| |||||| || ||||| |||||||  |||||| |||||||||| ||||    
T  24267630 attaattaattccaacaaattaatagaggggattcaaagaatcctaaccgtcgctaacattctgcaatcaaaa 24267702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 429
Target Start/End: Original strand, 13134853 - 13134951
Alignment:
Q  331 gacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaaccccacaaactcatcactt 429  Q
    ||||||| |||||||||| |||| ||||||||||||| |||||| ||||| | |||||  ||||||  || || ||||||||| ||| ||||||||||||    
T  13134853 gacctctaagagagtaagtcccc-cacgtacaaacccatgtgatcagtagattcaacttgacagctggtaggataataaaaccgcacgaactcatcactt 13134951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 25265020 - 25264899
Alignment:
Q  41 tacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaat--ctctcctcactcta 138  Q
    |||||||| |||||||||||||||| ||| ||||| ||| |   ||||||||||  ||||||||| || || ||||| | || |  ||||| ||| ||||    
T  25265020 tacaactcctctcattcataatttttcatacagaacgaagcgaatcaagaggaagacaagcactaggagcttcaaggtaagagttgctctcgtcattcta 25264921  T
Q  139 agtctttagggtatgttttatt 160  Q
    ||||| || |||||||||||||    
T  25264920 agtctctaaggtatgttttatt 25264899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 6e-82; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 164 - 549
Target Start/End: Complemental strand, 25937491 - 25937112
Alignment:
Q  164 aaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacctt 263  Q
    |||||||||||| ||| ||||||||||||||||| |||||| |||||| |||||||| |||||| |||||||||||| |||||| | |||||| |||| |    
T  25937491 aaccctaatttaagtcattgtttcaattacctctgagagaggaagaactccacatacctctacgcgcgaaggtgcatgtccctacaagattgatgaccct 25937392  T
Q  264 aagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaa 363  Q
    ||||||| | ||| ||||| |||||| |||||||||| |||| || || |||||  |||||||||||| ||||| |||||||||||||||||||| ||||    
T  25937391 aagcattgaactgtgtagacactctgatgtaaggttgaaacttgacagatggagtggaataaacccagtcctctaagagagtaaggccccacacgaacaa 25937292  T
Q  364 acccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcaga 463  Q
    |  |||||||| |||||||||||||| | || |  ||  |||||||| ||||||||||||||||||||||| ||| ||      ||||| ||| ||| ||    
T  25937291 aaacgtgtgattagtaggtgcaactcgatagttggtaagaaataaaatcccacaaactcatcacttaaataaaagacg------taaaatcaacatctga 25937198  T
Q  464 ataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 549  Q
    |||||||||||||||||||||||| ||||||||||||| | |||| |||| ||| ||||||| |||| || |||||||||| ||||    
T  25937197 ataatgcttgaccattaattaattccaacaaatgaataaaagggattcgaggaatcctaaccgccgcaaacattctgcaatcaaaa 25937112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 165 - 570
Target Start/End: Original strand, 12557234 - 12557629
Alignment:
Q  165 accctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacctta 264  Q
    ||||||||||| |||||| |||||| ||||| | ||| | ||||||||||||||||||||| | | ||||||||||  || |||| ||||||||||||||    
T  12557234 accctaatttaagtctttctttcaactacctttgagataataagaaccccacatacatctatgagtgaaggtgcatc-ccatatatgattgacgacctta 12557332  T
Q  265 agcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaa 364  Q
    |||||| ||  ||||| |||||  |||||||| ||||||||||| || |||||  |||||||| || |||| ||||||| ||||| || |||||||||||    
T  12557333 agcattgactcgcgtaaaaact--ggtgtaagattgcaactcgacagctggaggggaataaactcatacctttgagagaataaggtcc-acacgtacaaa 12557429  T
Q  365 cccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaa 464  Q
    |  ||||||| |||||||||||| ||||| ||  || |||||| ||||||||||||||||||||||||||||||      | || ||||||||||| ||     
T  12557430 catgtgtgattagtaggtgcaacgcaacaactggtataaaatataaccccacaaactcatcacttaaatagaag------acatcaaaccaatatctgac 12557523  T
Q  465 taatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaa 564  Q
    ||||| ||||||||||||||||| ||||||||||| | |||||   ||||||| |||| |  | ||||| |||||||||| ||||  | |||||||||||    
T  12557524 taatgtttgaccattaattaattccaacaaatgaacaaaggggctccgaagaatcctagctgctgctaacattctgcaatcaaaacagattacttctaaa 12557623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 182 - 308
Target Start/End: Complemental strand, 29883708 - 29883582
Alignment:
Q  182 tgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtag 281  Q
    |||||||||||||| | ||||||||||||||| ||||||||||| || |||||||||||  ||||||||||||||||||| |||||||| || ||| |||    
T  29883708 tgtttcaattacctttgagagagtaagaacccgacatacatctatgttcgaaggtgcatccccctataggattgacgaccctaagcattgacgtgcatag 29883609  T
Q  282 aaactctggtgtaaggttgcaactcga 308  Q
    ||||| ||||||||||||||| |||||    
T  29883608 aaactttggtgtaaggttgcagctcga 29883582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 12556698 - 12556825
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcctc 132  Q
    |||||||| || || |||||||||||||||| |||||| |||||| | ||||||||| || |||||| ||| || || |||||||||| ||  |||||||    
T  12556698 tataaataaaattcctctcattcataatttttcattcaaaatgaagcggttcaagagaaaggcaagcgctaggagcttcaagggaggagtctatctcctc 12556797  T
Q  133 actctaagtctttagggtatgttttatt 160  Q
    ||||||||||| ||||||||||||||||    
T  12556798 actctaagtctctagggtatgttttatt 12556825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 8446055 - 8446203
Alignment:
Q  8 ggcctaaacccaggcggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatg 107  Q
    |||| |||| |||| ||||||||| | |||||||||||||| |||||||||||||||| |||||  || ||||| |||||| | ||| |||| |||||||    
T  8446055 ggcccaaactcaggtggaaatcaagcctataaatacaactc-tctcattcataatttttcattcgaaacgaaacagttcaataagaaggcaaacactatg 8446153  T
Q  108 aactgcaagggaggaat-ctctcctcactctaagtctttagggtatgttt 156  Q
    | || |||||||||| |  ||||||||||||| |||| ||||||||||||    
T  8446154 agcttcaagggaggagtattctcctcactctatgtctctagggtatgttt 8446203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 294 - 445
Target Start/End: Original strand, 18539627 - 18539778
Alignment:
Q  294 aaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaaca 393  Q
    |||||| ||||| || || |||||  |||||||||| |||||||||||||||||||| ||||| |||||||||| |||||| | |||||| ||||||| |    
T  18539627 aaggttacaacttgaaagctggaggggaataaaccctgacctctgagagagtaaggcaccacatgtacaaacccatgtgatcactaggtgaaactcaaga 18539726  T
Q  394 gctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaa 445  Q
      |  ||| ||||||||||| |  |||||||||| |||||| ||| ||||||    
T  18539727 aatgctaggaaataaaaccctaggaactcatcacgtaaataaaagacgtaaa 18539778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 164 - 501
Target Start/End: Original strand, 18545431 - 18545761
Alignment:
Q  164 aaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacctt 263  Q
    |||||||||||| || ||| ||| |||||||||   ||||||||||||||||| ||| |||||| | |||||||||| ||| || || |||| ||||| |    
T  18545431 aaccctaatttaagtattttttt-aattacctccgtgagagtaagaaccccacgtacctctacgcgtgaaggtgcatctccatacagtattgtcgaccct 18545529  T
Q  264 aagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaa 363  Q
    |||| || || |||||||  |||||| ||||||| | ||||| || ||   |||  ||||||||||| || ||| |||||||||||||||||   |||||    
T  18545530 aagctttgacatgcgtagtcactctgttgtaagggtacaacttgacagagtgaggggaataaacccatacttcttagagagtaaggccccacgtctacaa 18545629  T
Q  364 acccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcaga 463  Q
    |||  |||||| | ||  || |||||||||  |  |   |||| |||||| || ||||||||||||||||| ||| ||      |||| |||||||  ||    
T  18545630 accgatgtgatcaatatctgaaactcaacatatgctttgaaatcaaacccaacgaactcatcacttaaataaaagacg------taaatccaatatatga 18545723  T
Q  464 ataatgcttgaccattaattaatttcaacaaatgaata 501  Q
    |||||| || |||||||||| |||  ||||||||||||    
T  18545724 ataatgatttaccattaatttattcaaacaaatgaata 18545761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 401 - 613
Target Start/End: Complemental strand, 25070456 - 25070251
Alignment:
Q  401 gaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaat 500  Q
    |||||||||||||||| ||||||||||||||||||||| |      |||||   |||||  ||||||||||||||||  ||||||||  |||||||||||    
T  25070456 gaaaataaaaccccacgaactcatcacttaaatagaaggc------ataaactaaatatttgaataatgcttgaccaa-aattaattctaacaaatgaat 25070364  T
Q  501 ataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgctctgggcgaatagattaaattgcaaaacc 600  Q
    | |||| | |||||||| | ||||| ||||||| ||  |||||| ||||   |||||||| ||| ||||||| || || || | |||||||| ||||||     
T  25070363 agagggaattcgaagaatcataaccgccgctaacatcttgcaatcaaaacatgttacttccaaattctcgctttgagcaaacaaattaaatttcaaaact 25070264  T
Q  601 cccttttatcttt 613  Q
    ||| |||||||||    
T  25070263 cccatttatcttt 25070251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 25938125 - 25938000
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 134  Q
    |||| ||||||||| |||||||||||| ||| ||||||||| ||| | |||||||| ||||||||| |||| || ||  ||||||||| ||||||||||     
T  25938125 tatacatacaactcctctcattcataaattttcattcagaacgaagcggttcaagacgaatgcaagtactaggatctttaagggaggagtctctcctcat 25938026  T
Q  135 tctaagtctttagggtatgttttatt 160  Q
    |||||||||   | ||||||||||||    
T  25938025 tctaagtctccggcgtatgttttatt 25938000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 367
Target Start/End: Original strand, 18553466 - 18553643
Alignment:
Q  188 aattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtagaaactc 287  Q
    ||||||||| | ||||||||||||||||||||| |||||  | |||||||||| ||| || || |||| ||||| ||||  ||||| |||||||| ||||    
T  18553466 aattacctccatgagagtaagaaccccacatacctctacacgtgaaggtgcatctccatacagtattgtcgaccctaagttttaacatgcgtagacactc 18553565  T
Q  288 tggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaaccc 367  Q
       |||||| || ||||| || ||   |||  |||||||||||||| |||  ||||||||||||||| | ||||||||||    
T  18553566 ctttgtaagattacaacttgacagaatgaggggaataaacccagacttct--gagagtaaggccccatatgtacaaaccc 18553643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 325 - 550
Target Start/End: Complemental strand, 18932618 - 18932408
Alignment:
Q  325 aacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcat 424  Q
    |||||| |||| |||||||||||| |||||||| ||||||||| |||||| |||| ||||| ||  ||||||  |||  | ||||||||||| |||||||    
T  18932618 aacccaaacctttgagagagtaagaccccacacctacaaacccatgtgatcagtatgtgcagctttacagctggtaggcagtaaaaccccacgaactcat 18932519  T
Q  425 cacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaac 524  Q
    | |||| | ||||| | ||| ||            | ||||||||||||| |||||||||||| ||||||||||||| ||| || |||||    ||||||    
T  18932518 cccttagagagaagacataagaaa-----------ctgaataatgcttgaacattaattaattccaacaaatgaataaaggagattcgaa----cctaac 18932434  T
Q  525 caccgctaatattctgcaataaaaaa 550  Q
     ||| |||| ||||||||||||||||    
T  18932433 taccactaacattctgcaataaaaaa 18932408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 465 - 568
Target Start/End: Complemental strand, 29883515 - 29883412
Alignment:
Q  465 taatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaa 564  Q
    ||||| ||||||||||||||||| ||||||||||||| | | || |||||||| ||||||| ||  ||| ||| |||||| ||||  ||||||| |||||    
T  29883515 taatgtttgaccattaattaattccaacaaatgaatagatgagattcgaagaatcctaaccgccattaacattttgcaatcaaaacaggttactcctaaa 29883416  T
Q  565 ctct 568  Q
    ||||    
T  29883415 ctct 29883412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 462 - 572
Target Start/End: Original strand, 8446879 - 8446989
Alignment:
Q  462 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttct 561  Q
    |||||||| |||||||||| |||||| ||||||||||||| |||||| || || || ||||||| || |||  ||||| |||| || |  ||||||||||    
T  8446879 gaataatgattgaccattatttaattccaacaaatgaatagaggggattcaaataatcctaaccgcctctatcattctacaatcaacataggttacttct 8446978  T
Q  562 aaactctcgct 572  Q
    |||||| ||||    
T  8446979 aaactcccgct 8446989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 31427305 - 31427187
Alignment:
Q  42 acaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcactctaagt 141  Q
    ||||||||||| ||| | ||||||  ||||| || ||| |  ||||||||||| |||  |||||||| || |||||||||  ||||||||||||| ||||    
T  31427305 acaactcatcttattaacaattttttattcaaaacgaagcgattcaagaggaaggcagacactatgagcttcaagggaggtctctctcctcactccaagt 31427206  T
Q  142 ctttagggtatgttttatt 160  Q
    || ||| ||||||||||||    
T  31427205 ctctagagtatgttttatt 31427187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 34368882 - 34368759
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 134  Q
    |||||||||||||| ||||||||| ||  |  |||||| |  ||| | |||||||||||| ||||| ||||  | || |||||||||| ||||  |||||    
T  34368882 tataaatacaactcctctcattcaaaaaatgtcattcatagcgaagcggttcaagaggaaggcaagtactagaagcttcaagggaggagtctc--ctcac 34368785  T
Q  135 tctaagtctttagggtatgttttatt 160  Q
    ||||||||| ||||||||||||||||    
T  34368784 tctaagtctctagggtatgttttatt 34368759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 549
Target Start/End: Complemental strand, 27869951 - 27869876
Alignment:
Q  474 accattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 549  Q
    ||||||||||| ||||||||||| |||| |||||| || |||||  |||||| ||||||| |||||||||| ||||    
T  27869951 accattaattactttcaacaaattaatagaggggattcaaagaattctaaccgccgctaacattctgcaatcaaaa 27869876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 388
Target Start/End: Original strand, 30695100 - 30695245
Alignment:
Q  242 tccctataggattgacgaccttaagcatt-aacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgag 340  Q
    |||||||||||||||| ||| ||| || | |||||  |||||||| |  |||||||||||||||| || || |||||   ||| |||||| |||| ||||    
T  30695100 tccctataggattgacaaccctaaacaatgaacctt-gtagaaacacaagtgtaaggttgcaact-gacagctggagggcaatgaacccaaacctttgag 30695197  T
Q  341 agagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaact 388  Q
    |||||||  ||||| ||| |||||| |||||||| |||||||||||||    
T  30695198 agagtaataccccagacgaacaaactcgtgtgatcagtaggtgcaact 30695245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 462 - 517
Target Start/End: Original strand, 30695274 - 30695329
Alignment:
Q  462 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaa 517  Q
    |||||||||||||||||||| ||||| ||||||||||| | ||| |||||||||||    
T  30695274 gaataatgcttgaccattaactaattccaacaaatgaaaagaggagactcgaagaa 30695329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 549
Target Start/End: Original strand, 45621731 - 45621802
Alignment:
Q  478 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 549  Q
    |||||||||| ||||||||||||| |||||| || ||||| | ||||| ||||||| |||||||||| ||||    
T  45621731 ttaattaattccaacaaatgaatagaggggattcaaagaatcttaaccgccgctaacattctgcaatcaaaa 45621802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 27870821 - 27870692
Alignment:
Q  33 cttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatct--ctcc 130  Q
    ||||||||||  |||| ||||||||||||| ||   ||||||| |||   ||| |||||||| |||| ||||| || || |||| ||||| |||  ||||    
T  27870821 cttataaatatcactcctctcattcataatatttttttcagaacgaagtggtttaagaggaaggcaaacactaagagcttcaagtgaggagtctttctcc 27870722  T
Q  131 tcactctaagtctttagggtatgttttatt 160  Q
    ||||||||||||| |||||||| |||||||    
T  27870721 tcactctaagtctctagggtatattttatt 27870692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 160
Target Start/End: Original strand, 8502060 - 8502170
Alignment:
Q  54 attcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaat----ctctcctcactctaagtctttaggg 149  Q
    |||||||||||  |||||| || ||| | |||||||||||| |||||||||  || || | |||||||| |    |||||||||||| |||||| |||||    
T  8502060 attcataatttctcattcaaaacgaagcggttcaagaggaaggcaagcacttggagcttctagggaggagtttctctctcctcactccaagtctctaggg 8502159  T
Q  150 tatgttttatt 160  Q
    |||||||||||    
T  8502160 tatgttttatt 8502170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 31433656 - 31433527
Alignment:
Q  34 ttataaatacaactcatctcattcataatt-ttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctc--c 130  Q
    |||||||||||||| |||| ||| | |||| ||  ||||| || ||| | ||| |||||||| |||||||||| || || |||||||||  ||||||  |    
T  31433656 ttataaatacaacttatcttattaacaattgttttattcaaaacgaagcggtttaagaggaaggcaagcactaggagcttcaagggaggtctctctctcc 31433557  T
Q  131 tcactctaagtctttagggtatgttttatt 160  Q
    |||||| |||||| ||| ||||||||||||    
T  31433556 tcactccaagtctctagagtatgttttatt 31433527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 163 - 549
Target Start/End: Complemental strand, 26008614 - 26008232
Alignment:
Q  163 gaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccc-cacatacatctacgtgcgaaggtgcatttccctataggattgacgacc 261  Q
    ||||| ||||||| ||| ||||||||| | ||||| ||||||||||||||| ||||||| ||||||  ||||||| ||| |||||| | |||||| ||||    
T  26008614 gaaccataatttaagtcattgtttcaaatgcctctgagagagtaagaacccacacatacctctacgcacgaaggtacatctccctacatgattgatgacc 26008515  T
Q  262 ttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtac 361  Q
     |||||||||||| |||| ||||||||||||||||||| ||||| || |  |||||  ||||||||| | |  | |||||||||||||||||||||||||    
T  26008514 ctaagcattaacccgcgtggaaactctggtgtaaggtttcaacttgacatctggaggggaataaacctatatttttgagagagtaaggccccacacgtac 26008415  T
Q  362 aaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatca 461  Q
    |||| ||| |||| |||||||||| ||| ||||    ||| ||||||||| ||| |||||||||||||||||||||  |||||||||     |||||||     
T  26008414 aaactcgtatgatcagtaggtgcagctcgacagacggtaggaaataaaactccataaactcatcacttaaatagaaaacgtaaaaat-----caatatcg 26008320  T
Q  462 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 549  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||| || || || | ||||||  ||||| ||||| |||| ||||    
T  26008319 gaataatgtttgaccattaattaatttcaacaaatgaatagaggggattcaaaaaatcttaaccattgctaacattctacaatcaaaa 26008232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 26009189 - 26009064
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 134  Q
    ||||||| |||||||||||||| || |||| |||||||||| ||||| |||||||||||| |||| |||||    ||  ||||||||| |||||| ||||    
T  26009189 tataaatgcaactcatctcatttatgatttcgcattcagaacgaaacggttcaagaggaaggcaaacactagatgctttaagggaggagtctctcatcac 26009090  T
Q  135 tctaagtctttagggtatgttttatt 160  Q
    ||||||||| ||||||||||||||||    
T  26009089 tctaagtctctagggtatgttttatt 26009064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 462 - 615
Target Start/End: Complemental strand, 17972441 - 17972286
Alignment:
Q  462 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa-tggttacttc 560  Q
    |||||||| |||||||||||||| || ||||||||||||| |||||| |||||||| ||| ||| ||||||| | | ||||||||||||  ||||| |||    
T  17972441 gaataatgtttgaccattaattagttccaacaaatgaataaaggggattcgaagaatccttaccgccgctaaaactttgcaataaaaaacaggttaattc 17972342  T
Q  561 -taaactctcgctctgg-gcgaatagattaaattgcaaaacccccttttatctttta 615  Q
     |||||||| |||||||  | |||||| |||||||||||| ||||||||||||||||    
T  17972341 ataaactcttgctctggtacaaatagactaaattgcaaaa-ccccttttatctttta 17972286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 24114793 - 24114918
Alignment:
Q  36 ataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggagga--atctctcctca 133  Q
    ||||||||||||| ||| ||| |||||||  ||||||||| ||| | |||||||||||| |||| ||||| || || | ||||||||   ||||||||||    
T  24114793 ataaatacaactcctcttattaataatttctcattcagaacgaagcggttcaagaggaaggcaaccactaggagcttctagggaggagtttctctcctca 24114892  T
Q  134 ctctaagtctttagggtatgttttat 159  Q
    ||| |||||| |||||||||||||||    
T  24114893 ctccaagtctatagggtatgttttat 24114918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 487
Target Start/End: Complemental strand, 14006489 - 14006348
Alignment:
Q  340 gagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagt 439  Q
    |||||||||||| ||||||||||||   |||| || | |||||||||  ||||||||  ||| |||||||||||||| || | |||||||| |||||||     
T  14006489 gagagtaaggcctcacacgtacaaatatgtgttattaataggtgcaatccaacagctggtaggaaataaaaccccacgaaattatcacttatatagaaga 14006390  T
Q  440 cgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatt 487  Q
    ||      ||||| ||||||| ||||||||||||| ||||||||||||    
T  14006389 cg------taaaatcaatatccgaataatgcttgatcattaattaatt 14006348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 26614290 - 26614415
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggagga--atctctcctc 132  Q
    |||||||||||||| ||||||||| |||| | ||||||||| | || ||||||||||||| ||| |||||| || ||  |||||||||   |||||||||    
T  26614290 tataaatacaactcctctcattcacaattattcattcagaacg-aagtgttcaagaggaaggcacgcactaggagcttgaagggaggagtctctctcctc 26614388  T
Q  133 actctaagtctttagggtatgttttatt 160  Q
    ||||| ||||| ||||||||||||||||    
T  26614389 actct-agtctctagggtatgttttatt 26614415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 17973208 - 17973172
Alignment:
Q  124 tctctcctcactctaagtctttagggtatgttttatt 160  Q
    |||||||||||||||||||||||||||||||||||||    
T  17973208 tctctcctcactctaagtctttagggtatgttttatt 17973172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 18829642 - 18829567
Alignment:
Q  87 aagaggaatgcaagcactatgaactgcaagggaggaatctc--tcctcactctaagtctttagggtatgttttatt 160  Q
    |||||||| |||||||||| || || |||||||||| ||||  |||||||||||||||| || |||||||||||||    
T  18829642 aagaggaaggcaagcactaggagcttcaagggaggagtctcgctcctcactctaagtctctacggtatgttttatt 18829567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 437
Target Start/End: Original strand, 24119466 - 24119578
Alignment:
Q  325 aacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcat 424  Q
    |||||| |||| |||||||||||| ||||||||||||| ||| ||||||| || ||||||||||  ||||||  ||   | |||||||| |  |||||||    
T  24119466 aacccatacctttgagagagtaagaccccacacgtacatacctgtgtgattagcaggtgcaacttgacagctattaagtagtaaaacccgatgaactcat 24119565  T
Q  425 cacttaaatagaa 437  Q
    |||||| ||||||    
T  24119566 cacttagatagaa 24119578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 438
Target Start/End: Complemental strand, 17972611 - 17972454
Alignment:
Q  278 gtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataag 377  Q
    ||||||||||||||||| ||||| |||| || || |||||  |||| ||||  |||||||||||||||||   |||||| ||| || | |||||||||||    
T  17972611 gtagaaactctggtgtatggttgtaact-ga-agctggaggggaatgaacct-gacctctgagagagtaaaatcccacatgtaaaatctcgtgtgataag 17972515  T
Q  378 taggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaag 438  Q
    |||||||||||  ||||||  ||   | ||||||| ||| ||||||||||||| ||| |||    
T  17972514 taggtgcaacttgacagctggtaagcagtaaaacctcacgaactcatcacttagatataag 17972454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 45264410 - 45264450
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaa 75  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  45264410 tataaatacaactcatctcattcattatttttcattcagaa 45264450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 374
Target Start/End: Original strand, 45265153 - 45265344
Alignment:
Q  178 tctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgc 277  Q
    ||||||||||| |||||||||||| ||||| |||| |||||||||||| |  | |||||||||| |     | |||||||| || | |||||| ||  ||    
T  45265153 tctttgtttcatttacctctaagatagtaacaaccacacatacatctatgcacaaaggtgcattcc-----aagattgacgtccctgagcattgactcgc 45265247  T
Q  278 gtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgat 374  Q
     || ||||||   |||||| ||||||||||| |  || ||  ||||||||||| |||||||| ||||||||  | ||||| |||||||  |||||||    
T  45265248 ataaaaactccaatgtaagtttgcaactcgacaactgaaggggaataaacccaaacctctgatagagtaagttcacacacttacaaacatgtgtgat 45265344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 5856269 - 5856214
Alignment:
Q  50 tctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcacta 105  Q
    ||||||||| |||||| ||||||||| ||| | |||||||||||| ||||||||||    
T  5856269 tctcattcacaatttttcattcagaacgaatcggttcaagaggaaggcaagcacta 5856214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 549
Target Start/End: Complemental strand, 12269035 - 12268948
Alignment:
Q  462 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 549  Q
    |||||||| ||||||||||| |||||  ||||||| |||| |||||| | |||||| ||||||  ||||||| ||||| |||| ||||    
T  12269035 gaataatgtttgaccattaactaattctaacaaataaatagaggggatttgaagaatcctaactgccgctaacattctacaatcaaaa 12268948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 159 - 510
Target Start/End: Complemental strand, 2504737 - 2504394
Alignment:
Q  159 ttatgaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacg 258  Q
    ||||||||||||||||| |||||||||| |||||||| | |||| ||||||| |||||||||||||| ||||||||||||||  || ||||||||||| |    
T  2504737 ttatgaaccctaatttaagtctttgttttaattacctttgagagggtaagaatcccacatacatctatgtgcgaaggtgcatc-ccgtataggattgatg 2504639  T
Q  259 accttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacg 358  Q
    | | |||||||| ||  | ||| ||||||   |||||| || |||||||| || || |  |||||||||||||||||||||||| ||||| || ||||||    
T  2504638 atcctaagcattgactcgtgtaaaaactccaatgtaag-ttacaactcgacagctgaatgagaataaacccagacctctgagagcgtaagacctcacacg 2504540  T
Q  359 tacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaata 458  Q
    |||||| | |||||||||||||||| ||||| | |||   ||| ||||||||||||| |||||| ||||||||||||||| ||      |||||| ||||    
T  2504539 tacaaatctgtgtgataagtaggtgtaactcgatagcaggtaggaaataaaaccccaaaaactcttcacttaaatagaagacg------taaaacaaata 2504446  T
Q  459 tcagaataatgcttgaccattaattaatttcaacaaatgaatataggggact 510  Q
    |  |||||||||||||||||||||||||| |||||| |||||| || |||||    
T  2504445 tatgaataatgcttgaccattaattaattccaacaagtgaatagagaggact 2504394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 23008144 - 23008019
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 134  Q
    |||||||||||||  ||||||| |||||||| |||||| || ||||| |||||||| ||| || ||||||| || || ||||||| || |||||| ||||    
T  23008144 tataaatacaacttctctcatttataatttttcattcaaaacgaaacggttcaagaagaaggcgagcactaggagcttcaagggatgagtctctcgtcac 23008045  T
Q  135 tctaagtctttagggtatgttttatt 160  Q
    ||||||||| ||||||||||||||||    
T  23008044 tctaagtctctagggtatgttttatt 23008019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 330 - 501
Target Start/End: Original strand, 4258600 - 4258765
Alignment:
Q  330 agacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactt 429  Q
    ||||||| ||||||||||||| |||||  |||||||  ||||||| |||||||  ||||| || ||| |||| |||||||||||||  ||||||||||||    
T  4258600 agacctccgagagagtaaggctccacaaatacaaacttgtgtgatcagtaggtttaactctactgctgataggaaataaaaccccatgaactcatcactt 4258699  T
Q  430 aaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaata 501  Q
    ||| | ||| ||      ||||||||||||  |||||||||||| ||||||| |||||  ||||||||||||    
T  4258700 aaacataagacg------taaaaccaatatttgaataatgcttgtccattaactaattcaaacaaatgaata 4258765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 2505389 - 2505242
Alignment:
Q  13 aaacccaggcggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactg 112  Q
    ||||||||| ||||||||  | ||| | |||| ||| ||||||||||| |||| |||||||||  || | |||||| ||||| |||| |||||||| ||     
T  2505389 aaacccaggtggaaatcattcctatgagtacagctcctctcattcatagtttttcattcagaacaaagcagttcaaaaggaaggcaaacactatgagctt 2505290  T
Q  113 caagggaggaatctctcctcactctaagtctttagggtatgttttatt 160  Q
    || ||||||| |||||||||||||||| ||| || |||||||||||||    
T  2505289 catgggaggagtctctcctcactctaactctctatggtatgttttatt 2505242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 244 - 430
Target Start/End: Complemental strand, 2454225 - 2454041
Alignment:
Q  244 cctataggattgacgaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagaga 343  Q
    |||| ||||||||||||| ||| || | | | | ||||||||||  |||||||||||||||| || ||||  || ||||| |||| |||||||| |||||    
T  2454225 cctacaggattgacgaccctaatcactgaaccgtgtagaaactccagtgtaaggttgcaact-gacagttaaaggagaatgaacc-agacctcttagaga 2454128  T
Q  344 gtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 430  Q
    ||||||  ||| || |||||||||||||||| |||||||| ||||  | || | ||||  | |||||||||||||||||||||||||    
T  2454127 gtaaggttccagacatacaaacccgtgtgatcagtaggtgaaacttcatagttgataggtagtaaaaccccacaaactcatcactta 2454041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 26133756 - 26133884
Alignment:
Q  34 ttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggagga--atctctcct 131  Q
    ||||||||||||||  ||| |||||||||||| |||||||||  || | ||||||||| || |||||||||||||  | ||||||||||   ||||||||    
T  26133756 ttataaatacaacttctcttattcataatttttcattcagaacaaagcagttcaagagaaaggcaagcactatgagtttcaagggaggagtctctctcct 26133855  T
Q  132 cactctaagtctttagggtatgttttatt 160  Q
    |||| |||| || ||||||||||||||||    
T  26133856 cactttaagactctagggtatgttttatt 26133884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 387
Target Start/End: Original strand, 15303243 - 15303375
Alignment:
Q  255 gacgaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggcccca 354  Q
    ||||||| ||| || ||||||| |||||||||| |||||||||||||||||||| || | |||  ||||||||| | |||| | |||||||||| ||| |    
T  15303243 gacgaccctaaacactaacctgtgtagaaactccggtgtaaggttgcaactcgacagctagaggggaataaacctatacctgtaagagagtaagacccga 15303342  T
Q  355 cacgtacaaacccgtgtgataagtaggtgcaac 387  Q
     ||||||||||  ||||||| | || |||||||    
T  15303343 aacgtacaaacttgtgtgatcattaagtgcaac 15303375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 489 - 574
Target Start/End: Complemental strand, 21227428 - 21227342
Alignment:
Q  489 caacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa-tggttacttctaaactctcgctct 574  Q
    |||||||| |||| |||||| |||||||| ||||||||| ||||||||| ||||||||||||   |||||||||||||||| |||||    
T  21227428 caacaaataaatagaggggattcgaagaatcctaaccactgctaatattttgcaataaaaaacatgttacttctaaactcttgctct 21227342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 26134370 - 26134480
Alignment:
Q  185 ttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtagaaa 284  Q
    ||||||||||||| ||||| ||| || | ||| || |||| ||| |||||||||||  ||||||| |||||||||||  |||||||||| ||| ||||||    
T  26134370 ttcaattacctctgagagaataacaaacacacgtatatctgcgtacgaaggtgcatccccctatatgattgacgacccaaagcattaacgtgcatagaaa 26134469  T
Q  285 ctctggtgtaa 295  Q
    |||| ||||||    
T  26134470 ctcttgtgtaa 26134480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 483 - 575
Target Start/End: Original strand, 19398665 - 19398758
Alignment:
Q  483 taatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaat-ggttacttctaaactctcgctctg 575  Q
    ||||| ||||||||  ||| ||| || || ||||| ||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  19398665 taattccaacaaatagatagaggagattcaaagaatcctaaccaccgctaatattgtgctataaaaaataggttactactaaactctcgctctg 19398758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 24751838 - 24751915
Alignment:
Q  83 gttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcactctaagtctttagggtatgttttatt 160  Q
    |||| ||||||| |||||||||  |||||  ||||||||| ||||||||||||||| |||| ||||||||||||||||    
T  24751838 gttcgagaggaaggcaagcacttagaactttaagggaggagtctctcctcactctatgtctctagggtatgttttatt 24751915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 10414629 - 10414756
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggagga--atctctcctc 132  Q
    ||||||||| |||| |||||||||||||||| |||||| || ||||| ||||||||||||  |||| |||| || ||   ||| ||||   |||||||||    
T  10414629 tataaataccactcctctcattcataatttttcattcataacgaaacggttcaagaggaagacaagtactaggagctttgaggaaggagtctctctcctc 10414728  T
Q  133 actctaagtctttagggtatgttttatt 160  Q
    |||||| |||||| |||| |||||||||    
T  10414729 actctatgtcttttgggtgtgttttatt 10414756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 477 - 615
Target Start/End: Complemental strand, 9890435 - 9890296
Alignment:
Q  477 attaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgctctg- 575  Q
    ||||||||||| |||||||| |||| |||||| | |||||| | ||||| ||||||| |||||||||| ||||  ||||  ||||||||||| ||||||     
T  9890435 attaattaattccaacaaattaatagaggggatttgaagaatcttaaccgccgctaagattctgcaatcaaaacaggttgtttctaaactcttgctctgc 9890336  T
Q  576 ggcgaatagattaaattgcaaaacccccttttatctttta 615  Q
      | || | | ||||||||||||||| | |||||||||||    
T  9890335 tacaaacaaactaaattgcaaaaccctcctttatctttta 9890296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 463 - 549
Target Start/End: Complemental strand, 2953847 - 2953763
Alignment:
Q  463 aataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaa 549  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||| | ||| || ||||||  |||||||||||||||||| ||||    
T  2953847 aataatgtttgaccattaattaattccaacaaatg-atataggggatttgaa-aatcctaacggccgctaatattctgcaatcaaaa 2953763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 8158522 - 8158397
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcctc 132  Q
    |||||||||| ||| |||||||||||||||| |||||| ||||||   |||||||||||| |||| ||||| || || |||||||| | ||  ||||  |    
T  8158522 tataaatacatctcctctcattcataatttttcattcataatgaagtggttcaagaggaaggcaaacactaggagcttcaagggagaagtctttctctac 8158423  T
Q  133 actctaagtctttagggtatgtttta 158  Q
    ||| ||| ||| ||||||||||||||    
T  8158422 actttaaatctctagggtatgtttta 8158397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 436
Target Start/End: Complemental strand, 18466424 - 18466287
Alignment:
Q  299 tgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctca 398  Q
    |||||||||| ||||||||  |||||| |||| | |||||| |||||||||||| ||||||||  ||| | ||||| ||  |||||||||| | | || |    
T  18466424 tgcaactcgacagttggaggggaataagcccatatctctgacagagtaaggcccgacacgtacctacctgggtgatcagcgggtgcaactcgataactga 18466325  T
Q  399 tagaaaataaaaccccacaaactcatcacttaaataga 436  Q
    |||  | ||||||||||| | ||||||||||| |||||    
T  18466324 taggtagtaaaaccccacgatctcatcacttatataga 18466287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 435
Target Start/End: Original strand, 21884872 - 21884973
Alignment:
Q  334 ctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaat 433  Q
    ||||||||||||||| |||||| |||||| ||| ||||||| || ||||||||||  |||||| ||||  | |||||||||  |||||| |||||| |||    
T  21884872 ctctgagagagtaagaccccacgcgtacatacctgtgtgatcagcaggtgcaactagacagctgataggcagtaaaaccccgtaaactcgtcacttgaat 21884971  T
Q  434 ag 435  Q
    ||    
T  21884972 ag 21884973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 435
Target Start/End: Original strand, 21912145 - 21912297
Alignment:
Q  283 aactctggtgtaa-ggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtagg 381  Q
    ||||| ||||||| |||||||||| || || |||||  |||| |||||| | |||||||| |||||| ||||||||||||| ||||||||||| |  | |    
T  21912145 aactccggtgtaatggttgcaact-gacagatggaggggaatgaacccatatctctgagaaagtaagaccccacacgtacatacccgtgtgatcaacatg 21912243  T
Q  382 tgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatag 435  Q
    |||||||||||| || ||||  | |||| ||||   |||||||||||| |||||    
T  21912244 tgcaactcaacatctgataggtagtaaagccccgtgaactcatcacttgaatag 21912297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 501
Target Start/End: Original strand, 8937976 - 8938113
Alignment:
Q  359 tacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaat 457  Q
    ||||||| |||||||| |||||||||||||| ||||||  || || ||||||||||||| ||||||||||||  || | ||      | ||  |||||||    
T  8937976 tacaaactcgtgtgatcagtaggtgcaactcgacagctggtaggataataaaaccccacgaactcatcacttttatgggag------acatttaaccaat 8938069  T
Q  458 atcagaataatgcttgaccattaattaatttcaacaaatgaata 501  Q
      | ||||||| |||||||||||||||||| |||||||||||||    
T  8938070 ccctgaataatacttgaccattaattaattccaacaaatgaata 8938113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 489 - 568
Target Start/End: Complemental strand, 23587870 - 23587790
Alignment:
Q  489 caacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa-tggttacttctaaactct 568  Q
    |||||||| |||| |||||  ||||||||  |||||||||||||| ||||||||||||||||  ||||||| |||||||||    
T  23587870 caacaaataaatagaggggtttcgaagaattctaaccaccgctaacattctgcaataaaaaacaggttactcctaaactct 23587790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 550
Target Start/End: Complemental strand, 9063067 - 9062981
Alignment:
Q  464 ataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa 550  Q
    |||||| ||||||| ||||||| | ||||||||||||| || ||| || |||||  |||||| ||||||| |||||||||| |||||    
T  9063067 ataatgtttgaccaataattaagtccaacaaatgaatagagaggattctaagaattctaaccgccgctaacattctgcaatcaaaaa 9062981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 9863310 - 9863388
Alignment:
Q  51 ctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctc 129  Q
    ||||||||||||||  |||||| |||||| | |||| ||||||| ||||||||||||| || ||| |||||| ||||||    
T  9863310 ctcattcataatttctcattcataatgaagcggttcgagaggaaggcaagcactatgagcttcaaaggaggagtctctc 9863388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 9916906 - 9916813
Alignment:
Q  337 tgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 430  Q
    ||||||| ||||||||||||| |||  ||||||||||| || | || |||||| |||||| ||||  | ||||||||||  |||||||||||||    
T  9916906 tgagagaataaggccccacacatacctacccgtgtgattagcatgtacaactcgacagctaataggtagtaaaaccccaataactcatcactta 9916813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 9924818 - 9924725
Alignment:
Q  337 tgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 430  Q
    ||||||| ||||||||||||| |||  ||||||||||| || | || |||||| |||||| ||||  | ||||||||||  |||||||||||||    
T  9924818 tgagagaataaggccccacacatacctacccgtgtgattagcatgtacaactcgacagctaataggtagtaaaaccccaataactcatcactta 9924725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 533
Target Start/End: Complemental strand, 2454021 - 2453950
Alignment:
Q  462 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaa 533  Q
    |||||||||||||||| | ||||| | ||||||||||||| |||||  ||||| || ||||||| |||||||    
T  2454021 gaataatgcttgaccaatcattaaatccaacaaatgaataaagggggttcgaataatcctaaccgccgctaa 2453950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 435
Target Start/End: Complemental strand, 13707865 - 13707766
Alignment:
Q  337 tgagagagtaaggccccacacgtacaaaccc-gtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatag 435  Q
    |||||||||||||||||||| ||||  |||| ||||||| |  | ||||||||  |||||| ||||  | ||||||||||| ||||||||||||| ||||    
T  13707865 tgagagagtaaggccccacatgtacctaccccgtgtgatcaacatgtgcaacttgacagctgataggtagtaaaaccccacgaactcatcacttagatag 13707766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 533
Target Start/End: Original strand, 16223989 - 16224044
Alignment:
Q  478 ttaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaa 533  Q
    |||||||||| ||||||||||||| |||||| || ||||| |||||||| ||||||    
T  16223989 ttaattaattccaacaaatgaatagaggggattcaaagaatcctaaccatcgctaa 16224044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 10480376 - 10480422
Alignment:
Q  163 gaaccctaatttacgtctttgtttcaattacctctaagagagtaaga 209  Q
    ||||||||||||| |||   |||||||||||||||||||||||||||    
T  10480376 gaaccctaatttaagtccacgtttcaattacctctaagagagtaaga 10480422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 21102126 - 21102240
Alignment:
Q  482 ttaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa-tggttacttctaaactctcgctctgggcga 580  Q
    |||||| ||||||||  | | |||||| |||||||| |||| |||||||||| ||| ||||||||||||  ||||||  |||||||||| ||||  || |    
T  21102126 ttaattccaacaaatagaaagaggggattcgaagaatcctatccaccgctaacattttgcaataaaaaacaggttacccctaaactctcactctaagcaa 21102225  T
Q  581 atagattaaattgca 595  Q
    | |||| ||||||||    
T  21102226 acagatcaaattgca 21102240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 4900934 - 4901038
Alignment:
Q  53 cattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaat--ctctcctcactctaagtctttagggt 150  Q
    |||||||||||   ||||||||| ||| | ||||||||| || |||||||||| || || ||| |||||  |  |||||||||||| |||||| ||||||    
T  4900934 cattcataattcctcattcagaacgaagcggttcaagagaaaggcaagcactaggagcttcaaaggaggtgtttctctcctcactccaagtctctagggt 4901033  T
Q  151 atgtt 155  Q
    |||||    
T  4901034 atgtt 4901038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 615
Target Start/End: Complemental strand, 2504380 - 2504300
Alignment:
Q  535 attctgcaataaaaaatggttacttctaaactctcgctctgggcgaatagattaaattgcaaaacccccttttatctttta 615  Q
    |||||||||| |||   ||||||| |||||||||  ||||  || || | ||||||||||||||||||| |||||||||||    
T  2504380 attctgcaatcaaaccaggttactcctaaactctttctctccgcaaacaaattaaattgcaaaacccccctttatctttta 2504300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 5485144 - 5485057
Alignment:
Q  51 ctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcctcactc 136  Q
    |||||||| |||||| ||||||||| ||| | ||||||||||||   |||||||| || || |||||||||| ||  |||||||||||    
T  5485144 ctcattcacaatttttcattcagaacgaagcggttcaagaggaagaaaagcactaggagcttcaagggaggagtctatctcctcactc 5485057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 6e-57; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 163 - 482
Target Start/End: Complemental strand, 28279010 - 28278699
Alignment:
Q  163 gaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacct 262  Q
    ||||||||||||| ||| ||||||||| |||| || |||||||||||||| ||  ||| ||||   |||||||||||| |||||| | |||||| ||||     
T  28279010 gaaccctaatttaagtcattgtttcaaataccactgagagagtaagaacctcatgtacctctatc-gcgaaggtgcatctccctacatgattgatgaccc 28278912  T
Q  263 taagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtaca 362  Q
    |||||||||||    ||||||||||||||| ||||||||||||||| | || | |  ||||||||| | |||| ||||||||||||| ||||||||||||    
T  28278911 taagcattaacacatgtagaaactctggtgcaaggttgcaactcgacaattagtggggaataaaccaa-acctatgagagagtaaggtcccacacgtaca 28278813  T
Q  363 aacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcag 462  Q
    ||| ||||| || |||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||||||      |  ||||| ||||||| |    
T  28278812 aactcgtgttatcagtaggtgcaactcgacaactgatagaaaataaaagcccacaaactcatcacttaaatagaag------atgtaaaatcaatatctg 28278719  T
Q  463 aataatgcttgaccattaat 482  Q
    ||||||| ||||||||||||    
T  28278718 aataatgtttgaccattaat 28278699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 218 - 601
Target Start/End: Original strand, 25922438 - 25922819
Alignment:
Q  218 tacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggag 317  Q
    ||||||||||||| | || ||||  ||||||| ||||||||||| ||||||| |||| | ||||||||||| |||||||| ||||||||||||| |||||    
T  25922438 tacatctacgtgctagggagcatccccctataagattgacgaccctaagcatgaacccgtgtagaaactctagtgtaaggatgcaactcgatagctggag 25922537  T
Q  318 cagaataaacc--cagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcata-gaaaataaaacccc 414  Q
      || |||| |    ||||| ||||||||||||||| |||||   ||||||  || ||| |||||||||||||  |||||   || ||||||||||| ||    
T  25922538 gggagtaaaacatatgacctatgagagagtaaggcctcacacacgcaaaccaatgcgatcagtaggtgcaacttgacagcatgtaggaaaataaaactcc 25922637  T
Q  415 acaaactcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaa 514  Q
    ||||||||||||||||||||||      | | ||  |||||||||| |||||||| ||||||||||||||||| | ||||||||||| | | || || ||    
T  25922638 acaaactcatcacttaaataga------atacatttaaccaatatctgaataatgtttgaccattaattaattccgacaaatgaataaatgagattctaa 25922731  T
Q  515 gaaccctaaccaccgctaatattctgcaat-aaaaaatggttacttctaaactctcgctctgggcgaatagattaaattgcaaaaccc 601  Q
     || | ||||  ||||||| ||| |||||| | |||   |||||| ||||||||| |||||| || ||||||| |||||||| |||||    
T  25922732 aaatcttaacagccgctaacattttgcaatcataaacatgttactcctaaactcttgctctgagcaaatagatcaaattgcacaaccc 25922819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 181 - 385
Target Start/End: Original strand, 23379807 - 23380011
Alignment:
Q  181 ttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgta 280  Q
    ||||||||||||||| | |||||||||||||||||| ||| |||||| || ||||||||| |||||| | |||||| |||| || |||| || ||| | |    
T  23379807 ttgtttcaattacctatgagagagtaagaaccccacgtacctctacgcgcaaaggtgcatctccctacatgattgaagaccctatgcatgaaactgtgga 23379906  T
Q  281 gaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtag 380  Q
    ||||||||| ||||| |||||||||||| |  |||||  |||| |||   |||| || ||| |||||| ||||||| |||||||| ||| ||||||||||    
T  23379907 gaaactctgttgtaatgttgcaactcgacacctggaggggaattaactatgaccactaagaaagtaagaccccacatgtacaaactcgtatgataagtag 23380006  T
Q  381 gtgca 385  Q
    |||||    
T  23380007 gtgca 23380011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 25934012 - 25934122
Alignment:
Q  33 cttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcc 130  Q
    |||||||||||| ||| | ||||||||| |||  ||||||||||||||| |||||||||||| || |||||||||||||  ||||||||| ||  |||||    
T  25934012 cttataaatacatctcctatcattcatattttctcattcagaatgaaacggttcaagaggaaggctagcactatgaactttaagggaggagtctttctcc 25934111  T
Q  131 tcactctaagt 141  Q
    |||||||||||    
T  25934112 tcactctaagt 25934122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 20533070 - 20533180
Alignment:
Q  50 tctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcactctaagtctttaggg 149  Q
    |||||||||| ||||  ||||||||||||| | ||||||||||||  ||||||| |||| || || ||||||| |||||||||||||||||||| ||||     
T  20533070 tctcattcattatttctcattcagaatgaagcggttcaagaggaagacaagcaccatgagcttcaggggaggagtctctcctcactctaagtctctagga 20533169  T
Q  150 tatgttttatt 160  Q
    ||| |||||||    
T  20533170 tatattttatt 20533180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 482 - 595
Target Start/End: Original strand, 32417200 - 32417314
Alignment:
Q  482 ttaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaat-ggttacttctaaactctcgctctgggcga 580  Q
    |||||| |||||| | |||| |||||| |||||||| |||||||||| |||| |||||| |||||||||| |||||||||||||||| |||||| ||| |    
T  32417200 ttaattccaacaagtaaatagaggggattcgaagaatcctaaccaccactaacattctgaaataaaaaataggttacttctaaactcacgctctaggcaa 32417299  T
Q  581 atagattaaattgca 595  Q
    | |||| ||| ||||    
T  32417300 aaagataaaactgca 32417314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 199 - 317
Target Start/End: Original strand, 27921055 - 27921174
Alignment:
Q  199 agagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtagaaactctggtgtaa-gg 297  Q
    ||||||||||||||||||||| ||||||||  |||||||| | ||||||||  |||||||||| || ||||| ||  || ||||||||  |||||||  |    
T  27921055 agagagtaagaaccccacataaatctacgtatgaaggtgcgtctccctatataattgacgaccctatgcattgacgcgcatagaaacttcggtgtaatag 27921154  T
Q  298 ttgcaactcgatagttggag 317  Q
    ||||||||||| ||||||||    
T  27921155 ttgcaactcgacagttggag 27921174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 321 - 430
Target Start/End: Original strand, 20533745 - 20533854
Alignment:
Q  321 aataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaac 420  Q
    |||||||| | ||||| ||||||||||||||||||||||| |||| | ||||||  ||||||||||||||||| ||   ||  ||||||||| |||| |     
T  20533745 aataaaccaaaacctccgagagagtaaggccccacacgtataaactcatgtgatttgtaggtgcaactcaacaactgtaaggtaataaaacctcacatag 20533844  T
Q  421 tcatcactta 430  Q
    ||||||||||    
T  20533845 tcatcactta 20533854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 28279825 - 28279720
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 134  Q
    |||||||||||| | ||||||||||  || ||||||||||| ||| | ||| |||||||| |||| ||||| || ||  ||||||||| |||||||||||    
T  28279825 tataaatacaacccttctcattcattcttatgcattcagaacgaagcggtttaagaggaaggcaaacactaggagctttaagggaggactctctcctcac 28279726  T
Q  135 tctaag 140  Q
    ||||||    
T  28279725 tctaag 28279720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 18223354 - 18223299
Alignment:
Q  381 gtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaataga 436  Q
    |||||||||||||||| ||||  | |||||||||||||||||||||||||||||||    
T  18223354 gtgcaactcaacagctaataggtagtaaaaccccacaaactcatcacttaaataga 18223299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 15544434 - 15544332
Alignment:
Q  334 ctctgagagagtaaggcccc-acacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaa 432  Q
    ||||||||||||||| |||| ||||||||  ||||||||||| |||||||||| ||| ||| ||  |||  | ||||||||||| |||| ||||||||||    
T  15544434 ctctgagagagtaagacccccacacgtacctacccgtgtgatcagtaggtgcagctcgacaactgctaggtagtaaaaccccacgaacttatcacttaaa 15544335  T
Q  433 tag 435  Q
    |||    
T  15544334 tag 15544332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 17831225 - 17831100
Alignment:
Q  37 taaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcctcac 134  Q
    ||||||| |||| |||||||||||||||  |||| |||| ||| | ||| ||||||||||||||||||| || ||  || |||||| ||  | | |||||    
T  17831225 taaataccactcctctcattcataatttctcatttagaacgaatcggtttaagaggaatgcaagcactaagagctctaatggaggagtcttttttctcac 17831126  T
Q  135 tctaagtctttagggtatgttttatt 160  Q
    ||||| ||| ||||||||||||||||    
T  17831125 tctaaatctctagggtatgttttatt 17831100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 17336804 - 17336949
Alignment:
Q  13 aaacccaggcggaaatcaaacttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactg 112  Q
    ||||||| | ||||| ||| | ||| |||||||||| |||||| ||||||||| |||||| ||  |||| ||| ||||||||  ||||||||| || ||     
T  17336804 aaacccaagtggaaaccaagcctattaatacaactcttctcat-cataatttttcattcacaaa-aaacggtttaagaggaagtcaagcactaggagctt 17336901  T
Q  113 caagggaggaatctctcctcactctaagtctttagggtatgttttatt 160  Q
    |||| ||||| ||| |||||||||||||  | ||||| ||||||||||    
T  17336902 caagagaggagtctatcctcactctaagcttctagggcatgttttatt 17336949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 489 - 575
Target Start/End: Original strand, 27921254 - 27921341
Alignment:
Q  489 caacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaat-ggttacttctaaactctcgctctg 575  Q
    |||||||| |||| |||||| |||||||| ||||||| | ||||| |||||||||| ||||   ||||||||||||||||||| ||||    
T  27921254 caacaaataaataaaggggattcgaagaatcctaacctctgctaacattctgcaatcaaaaccaggttacttctaaactctcgttctg 27921341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 17337558 - 17337615
Alignment:
Q  331 gacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaact 388  Q
    ||||||||||||||| | ||||||||||||||||| ||||| || ||||| |||||||    
T  17337558 gacctctgagagagtcaagccccacacgtacaaactcgtgtcatcagtagatgcaact 17337615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 26252997 - 26252883
Alignment:
Q  50 tctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaat--ctctcctcactctaagtctt--t 145  Q
    |||||||||||||||  ||||||||||||| | |||||||||||| |||||| ||| || || ||||| || | |  |||||||||||| || | ||  |    
T  26252997 tctcattcataatttctcattcagaatgaagcagttcaagaggaaggcaagcgctaggagcttcaaggaagtagttcctctcctcactccaaatttttct 26252898  T
Q  146 agggtatgttttatt 160  Q
    |||||||||||||||    
T  26252897 agggtatgttttatt 26252883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 28253675 - 28253619
Alignment:
Q  332 acctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaact 388  Q
    |||| |||||||||||| ||||||| ||||| ||||||||||| || ||||||||||    
T  28253675 acctttgagagagtaagaccccacatgtacatacccgtgtgatcagcaggtgcaact 28253619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 209
Target Start/End: Original strand, 15492504 - 15492535
Alignment:
Q  178 tctttgtttcaattacctctaagagagtaaga 209  Q
    ||||||||||||||||||||||||||||||||    
T  15492504 tctttgtttcaattacctctaagagagtaaga 15492535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 388
Target Start/End: Original strand, 112286 - 112395
Alignment:
Q  278 gtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataag 377  Q
    ||||||||||||||| ||||||||||| ||| || |||||   ||| |||||| ||| | ||||| ||||| ||||||| ||||  ||||||||||| ||    
T  112286 gtagaaactctggtggaaggttgcaac-cgacagctggagggaaatgaacccataccaccgagagggtaagaccccacatgtacgtacccgtgtgatcag 112384  T
Q  378 taggtgcaact 388  Q
     ||||| ||||    
T  112385 caggtgtaact 112395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 489 - 559
Target Start/End: Complemental strand, 15470177 - 15470107
Alignment:
Q  489 caacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttactt 559  Q
    |||||||| |||| |||||| || ||||| ||||||| ||||||||||| |||||| |||| |||| ||||    
T  15470177 caacaaataaatagaggggattcaaagaatcctaaccgccgctaatattttgcaatcaaaattggtaactt 15470107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 19762195 - 19762257
Alignment:
Q  67 cattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctc 129  Q
    ||||||||| ||| | |||||||||||| |||||||||| || || |||||||||| ||||||    
T  19762195 cattcagaacgaagcagttcaagaggaaggcaagcactaggagcttcaagggaggagtctctc 19762257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 519 - 574
Target Start/End: Original strand, 23014477 - 23014533
Alignment:
Q  519 cctaaccaccgctaatattctgca-ataaaaaatggttacttctaaactctcgctct 574  Q
    ||||||||||||||| ||||||||  ||||||  ||||||||||||||| |||||||    
T  23014477 cctaaccaccgctaacattctgcatttaaaaacaggttacttctaaactttcgctct 23014533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 9e-50; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 320 - 575
Target Start/End: Original strand, 27542602 - 27542851
Alignment:
Q  320 gaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaa 419  Q
    ||||||| ||| || ||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||| || | ||  | | ||||||||| | |||||    
T  27542602 gaataaaaccatacatctgagagattaaggccccacacatacaaacctgtgtgattagtaggtgcaactaaagaactggttggaaataaaactctacaaa 27542701  T
Q  420 ctcatcacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaacc 519  Q
    ||||||||||||||||||| |      |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| | |||| ||||||||      
T  27542702 ctcatcacttaaatagaagac------ataaaaccaatatctgaataatgtttgaccattaattaattccaacaaatgaatagatgggattcgaagaatt 27542795  T
Q  520 ctaaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgctctg 575  Q
    |||||||||| |||  ||||| ||| ||||  ||||||||||||||||| ||||||    
T  27542796 ctaaccaccgttaactttctgtaatcaaaacaggttacttctaaactcttgctctg 27542851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 18473555 - 18473682
Alignment:
Q  33 cttataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctc 132  Q
    ||||||||||| |||  ||| |||||||||||| |||||| || |||   |||||||||||| ||||||||||||| || |||||||||| ||||||||     
T  18473555 cttataaataccacttctctaattcataatttttcattcataacgaagaggttcaagaggaaggcaagcactatgagcttcaagggaggattctctcctg 18473654  T
Q  133 actctaagtctttagggtatgttttatt 160  Q
    ||||||||||| ||||||||||||||||    
T  18473655 actctaagtctctagggtatgttttatt 18473682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 182 - 317
Target Start/End: Complemental strand, 29756076 - 29755941
Alignment:
Q  182 tgtttcaattacctctaagagagtaagaaccccacatacatctacgtg-cgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgta 280  Q
    |||||||||||| | | |||||||||||||| |||||||||||||||| |||||||||||  ||||||| ||||||||||||| |||||| ||  |  ||    
T  29756076 tgtttcaattacatttgagagagtaagaacctcacatacatctacgtgtcgaaggtgcatccccctataagattgacgaccttgagcattgactggtata 29755977  T
Q  281 gaaactctggtgtaaggttgcaactcgatagttggag 317  Q
    ||| || ||||||||||||||||||||| ||||||||    
T  29755976 gaagctttggtgtaaggttgcaactcga-agttggag 29755941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 188 - 305
Target Start/End: Original strand, 20339446 - 20339563
Alignment:
Q  188 aattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtagaaactc 287  Q
    ||||| |||| ||| ||||||| || ||| ||||| || |||||||||||||| ||| ||||||||||| |||| ||| |||| ||  ||||||||||||    
T  20339446 aattaactctgagatagtaagagcctcacgtacatttatgtgcgaaggtgcatctccatataggattgatgaccctaaacattgactcgcgtagaaactc 20339545  T
Q  288 tggtgtaaggttgcaact 305  Q
     |||||||| ||||||||    
T  20339546 cggtgtaagtttgcaact 20339563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 568
Target Start/End: Complemental strand, 25756939 - 25756834
Alignment:
Q  462 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttct 561  Q
    |||||||| ||||||||||||||||| |||||||| |||| || ||| |||||| | ||||||||||||||| ||| |||||| ||||  || |||| ||    
T  25756939 gaataatgtttgaccattaattaattccaacaaataaatagagaggattcgaag-atcctaaccaccgctaacattttgcaatcaaaacaggctactcct 25756841  T
Q  562 aaactct 568  Q
    |||||||    
T  25756840 aaactct 25756834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 21018959 - 21019037
Alignment:
Q  83 gttcaagaggaatgcaagcactatgaactgcaagggaggaatctctc--ctcactctaagtctttagggtatgttttat 159  Q
    |||||||||||| ||||||| || || || ||||||| |||||||||  |||||||||||||| |||||||||||||||    
T  21018959 gttcaagaggaaggcaagcattaggagcttcaagggaagaatctctctactcactctaagtctctagggtatgttttat 21019037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 51119050 - 51119175
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctcctcac 134  Q
    ||||||| |||||||||||||| | |||| | |||||| ||||||   ||||||||| || |||| ||| | ||||| |||||||| | ||||||  | |    
T  51119050 tataaattcaactcatctcattaacaattattcattcataatgaagtggttcaagagaaaggcaaacaccaggaacttcaagggagtagtctctctcctc 51119149  T
Q  135 tctaagtctttagggtatgttttatt 160  Q
     |||||||| ||||||||||||||||    
T  51119150 actaagtctctagggtatgttttatt 51119175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 575
Target Start/End: Complemental strand, 21083519 - 21083425
Alignment:
Q  482 ttaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaat-ggttacttctaaactctcgctctg 575  Q
    |||||||||||||||||||| |||  | ||||||||  |||||| ||  |||  ||||||||||||||   ||||||||||||||||||||||||    
T  21083519 ttaatttcaacaaatgaatagaggatattcgaagaattctaaccgcctgtaacgttctgcaataaaaatcaggttacttctaaactctcgctctg 21083425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 451 - 501
Target Start/End: Original strand, 20339619 - 20339669
Alignment:
Q  451 aaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaata 501  Q
    |||||||| |||||||||||||||  |||| |||||| |||||||||||||    
T  20339619 aaccaataccagaataatgcttgattattatttaattccaacaaatgaata 20339669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 25757217 - 25757176
Alignment:
Q  168 ctaatttacgtctttgtttcaattacctctaagagagtaaga 209  Q
    |||||||| |||| |||||||||||||||| |||||||||||    
T  25757217 ctaatttaagtctatgtttcaattacctctgagagagtaaga 25757176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 433
Target Start/End: Complemental strand, 21083588 - 21083560
Alignment:
Q  405 ataaaaccccacaaactcatcacttaaat 433  Q
    |||||||||||||||||||||||||||||    
T  21083588 ataaaaccccacaaactcatcacttaaat 21083560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 158 - 326
Target Start/End: Original strand, 26214999 - 26215167
Alignment:
Q  158 attatgaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgac 257  Q
    |||| |||| ||||||||  ||| || || |||||||||| || ||| |||||||||||||||||||||||| ||||||| ||  |||||||||||||||    
T  26214999 attaggaactctaatttaaatctatgctttaattacctctgagggagcaagaaccccacatacatctacgtgtgaaggtgtatccccctataggattgac 26215098  T
Q  258 gaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaa 326  Q
    |||| |||||||||||  |||||||||||| ||||||||  ||||||| || ||||||||  |||||||    
T  26215099 gaccctaagcattaacgcgcgtagaaactccggtgtaagtctgcaacttgacagttggaggggaataaa 26215167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 474 - 575
Target Start/End: Original strand, 33655719 - 33655820
Alignment:
Q  474 accattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaatggttacttctaaactctcgctc 573  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||||| ||| |||| |||||||||| ||||  ||||||||||||||| ||||||    
T  33655719 accattaattaatttcaacaaatgaatagaggggattcgaagaatcctaactaccactaacattctgcaatcaaaacaggttacttctaaactatcgctc 33655818  T
Q  574 tg 575  Q
    ||    
T  33655819 tg 33655820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 278 - 429
Target Start/End: Original strand, 24187887 - 24188038
Alignment:
Q  278 gtagaaactctggtgtaa-ggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataa 376  Q
    |||| ||||||||||||| |||||||||| || |||||||| ||||| ||| || ||||||||||||||||| || |||| ||||  ||||||||||| |    
T  24187887 gtaggaactctggtgtaatggttgcaact-gaaagttggaggagaatgaactcatacctctgagagagtaagacctcacatgtacctacccgtgtgatca 24187985  T
Q  377 gtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactt 429  Q
    | ||||||||||| |||||| ||||  | |||||||| | |||||||||||||    
T  24187986 gcaggtgcaactcgacagctgataggtagtaaaacccaataaactcatcactt 24188038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 163 - 317
Target Start/End: Original strand, 20404299 - 20404452
Alignment:
Q  163 gaaccctaatttacgtctttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgacct 262  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||  ||||||||||||| ||| ||||||||||||   |||||||| |||||||||      
T  20404299 gaactctaatttaagtctttgtttcaattacctctgagagagtaattaccccacatacatttacatgcgaaggtgca-ccccctatagaattgacgacac 20404397  T
Q  263 taagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggag 317  Q
    ||||||||||     |||||||||  | ||||||||| |||||  ||||||||||    
T  20404398 taagcattaagacatgtagaaacttcgttgtaaggttacaactgaatagttggag 20404452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 462 - 550
Target Start/End: Complemental strand, 9386330 - 9386242
Alignment:
Q  462 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattctgcaataaaaaa 550  Q
    |||||||| ||||||||||||||||| ||||||||| ||| |||| | |||||||| ||||||| ||||||| |||||||||| |||||    
T  9386330 gaataatgtttgaccattaattaattccaacaaatggatagagggaattcgaagaatcctaaccgccgctaacattctgcaatcaaaaa 9386242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 183 - 308
Target Start/End: Original strand, 33655518 - 33655643
Alignment:
Q  183 gtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgtaga 282  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||||  ||||||||||  | ||||| |||||| |||| |||||||| ||   | |||     
T  33655518 gtttcaattacctatgagagagtaaaaaccccacatacatctacgtttgaaggtgcatccctctataagattgatgaccctaagcattgacacacatagg 33655617  T
Q  283 aactctggtgtaaggttgcaactcga 308  Q
    |||||  |||||||||| ||||||||    
T  33655618 aactccagtgtaaggttacaactcga 33655643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 251 - 446
Target Start/End: Complemental strand, 34479000 - 34478810
Alignment:
Q  251 gattgacgaccttaagcattaacctgcgtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggc 350  Q
    ||||||||||| ||| || |||| || ||||||||||    |||||||||| |||| |||  ||||| ||||| |||| |||||||||||   |||||||    
T  34479000 gattgacgaccgtaaacactaacttgtgtagaaactccaaagtaaggttgccactcaatacgtggaggagaatgaacc-agacctctgag---gtaaggc 34478905  T
Q  351 cccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaagtcgtaaaa 446  Q
    | |||||| |||||||||||||| | ||||||||||||  ||| || ||||  | |||||| | || ||||||||||||| ||||||| |||||||    
T  34478904 ctcacacgcacaaacccgtgtgaca-gtaggtgcaacttgacacctgataggcagtaaaactctacgaactcatcacttagatagaagacgtaaaa 34478810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 10821728 - 10821616
Alignment:
Q  50 tctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctctc--ctcactctaagtctttag 147  Q
    |||||||| ||||||   |||||||||||| | |||||||||||| |||| ||||| || ||  ||||||||| ||||||  |||| ||||||||| |||    
T  10821728 tctcattcgtaatttcttattcagaatgaagcggttcaagaggaaggcaaacactaagagctttaagggaggagtctctctcctcattctaagtctctag 10821629  T
Q  148 ggtatgttttatt 160  Q
    |||||||||||||    
T  10821628 ggtatgttttatt 10821616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 26214413 - 26214540
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaa--tctctcctc 132  Q
    |||||||||||||  |||||||||||||||| | |||| |||||||| |||||||| ||| ||||  |||||||  | ||||| |  ||  |||||| ||    
T  26214413 tataaatacaacttctctcattcataatttttccttcaaaatgaaacagttcaagaagaaggcaaatactatgaggttcaaggaaaaaatctctctcatc 26214512  T
Q  133 actctaagtctttagggtatgttttatt 160  Q
    |||||||| || |||||||| |||||||    
T  26214513 actctaagactctagggtatattttatt 26214540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 9387183 - 9387065
Alignment:
Q  44 aactcatctcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggaggaatctct--cctcactctaagt 141  Q
    ||||| ||||||||| | |||  ||||||||| | | | |||||||||||| ||||| |||| || || |||||||||| | |||  || ||||||||||    
T  9387183 aactcctctcattcacagtttctcattcagaacgtagcggttcaagaggaaggcaagtactaggagcttcaagggaggagtttctatccacactctaagt 9387084  T
Q  142 ctttagggtatgttttatt 160  Q
    || ||||||||||||||||    
T  9387083 ctctagggtatgttttatt 9387065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 52 - 160
Target Start/End: Complemental strand, 10504699 - 10504589
Alignment:
Q  52 tcattcataattttgcattcagaatgaaactgttcaagaggaatgcaagcactatgaactgcaagggagga--atctctcctcactctaagtctttaggg 149  Q
    |||||||||||||  ||||||||| ||| | ||||||||| || |||||||||| ||  | ||||||||||   |||||| |||||| |||||| ||| |    
T  10504699 tcattcataatttctcattcagaacgaagcggttcaagagaaaggcaagcactaggagtttcaagggaggagtttctctcatcactccaagtctctagag 10504600  T
Q  150 tatgttttatt 160  Q
    |||||||||||    
T  10504599 tatgttttatt 10504589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 35 - 160
Target Start/End: Complemental strand, 14882481 - 14882353
Alignment:
Q  35 tataaatacaactcatctcattcataattttgcattcagaatgaaa-ctgttcaagaggaatgcaagcactatgaactgcaagggaggaatc--tctcct 131  Q
    ||||| ||| |||| | |||||||||||| | |||||||||  ||| | |||||||| ||| || | || || || || |||||||||| ||  ||||||    
T  14882481 tataattaccactcctttcattcataattattcattcagaactaaagcggttcaagaagaaggcgaacattaggagcttcaagggaggagtccctctcct 14882382  T
Q  132 cactctaagtctttagggtatgttttatt 160  Q
    |||||||||||| ||||||||||||||||    
T  14882381 cactctaagtctctagggtatgttttatt 14882353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 463 - 508
Target Start/End: Original strand, 20404510 - 20404555
Alignment:
Q  463 aataatgcttgaccattaattaatttcaacaaatgaatatagggga 508  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||||    
T  20404510 aataatgcttgaccattaattaattccaacaaatgtatagagggga 20404555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 401
Target Start/End: Original strand, 15613859 - 15613935
Alignment:
Q  325 aacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatag 401  Q
    |||||| |||| |||||||||||  ||||||||||||| || |||||||| || ||||||||||  |||||| ||||    
T  15613859 aacccaaacctttgagagagtaaaaccccacacgtacatacacgtgtgatcagcaggtgcaacttgacagctgatag 15613935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 430
Target Start/End: Complemental strand, 21547286 - 21547206
Alignment:
Q  350 ccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcactta 430  Q
    ||||| ||||||||||| ||||| | | ||||||||||||||||| |  ||| |||| ||||||| | |||||||||||||    
T  21547286 ccccatacgtacaaacctgtgtggtcaataggtgcaactcaacagatggtaggaaatgaaaccccgcgaactcatcactta 21547206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 436
Target Start/End: Original strand, 28585731 - 28585847
Alignment:
Q  320 gaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaa 419  Q
    |||| |||||| | |||||| |||||||| ||||||||||||  ||| | ||||| |  |||| |||||| |||||| ||||  | ||||||| ||||||    
T  28585731 gaatgaacccatatctctgatagagtaagaccccacacgtacttaccagcgtgatcaacaggttcaactcgacagctgataggtagtaaaacctcacaaa 28585830  T
Q  420 ctcatcacttaaataga 436  Q
    ||||| ||||| |||||    
T  28585831 ctcattacttagataga 28585847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 438
Target Start/End: Complemental strand, 9386455 - 9386343
Alignment:
Q  325 aacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcat 424  Q
    |||||||| ||||||||||||| || | |||||||||||||  ||||||| ||||| |||||||  | ||||  |||  | ||||||||||  || ||||    
T  9386455 aacccagaactctgagagagta-ggacacacacgtacaaacttgtgtgatcagtagatgcaacttgaaagctggtaggtagtaaaaccccatgaattcat 9386357  T
Q  425 cacttaaatagaag 438  Q
    |||||| |||||||    
T  9386356 cacttagatagaag 9386343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 435
Target Start/End: Original strand, 23088053 - 23088153
Alignment:
Q  334 ctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaat 433  Q
    ||||||||||||||| ||| ||||||||  ||||||||||| || ||||||||| | | |||| |||   | ||||||||||  |||||||||||| |||    
T  23088053 ctctgagagagtaagaccc-acacgtacctacccgtgtgatcagcaggtgcaacacgatagctgataagtagtaaaaccccatgaactcatcacttgaat 23088151  T
Q  434 ag 435  Q
    ||    
T  23088152 ag 23088153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 32759527 - 32759448
Alignment:
Q  83 gttcaagaggaatgcaagcactatgaactgcaagggaggaat--ctctcctcactctaagtctttagggtatgttttatt 160  Q
    |||||||||||| ||||||| || || || | |||||||| |  |||||||||||| |||||| || |||||||||||||    
T  32759527 gttcaagaggaaggcaagcattaggagcttccagggaggagtttctctcctcactccaagtctctaaggtatgttttatt 32759448  T

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Target: scaffold0016 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 181 - 385
Target Start/End: Complemental strand, 12658 - 12454
Alignment:
Q  181 ttgtttcaattacctctaagagagtaagaaccccacatacatctacgtgcgaaggtgcatttccctataggattgacgaccttaagcattaacctgcgta 280  Q
    ||||||||||||||| | |||||||||||||||||| ||| |||||| || ||||||||| |||||| | |||||| |||| || |||| || ||| | |    
T  12658 ttgtttcaattacctatgagagagtaagaaccccacgtacctctacgcgcaaaggtgcatctccctacatgattgaagaccctatgcatgaaactgtgga 12559  T
Q  281 gaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtag 380  Q
    ||||||||| ||||| |||||||||||| |  |||||  |||| |||   |||| || ||| |||||| ||||||| |||||||| ||| ||||||||||    
T  12558 gaaactctgttgtaatgttgcaactcgacacctggaggggaattaactatgaccactaagaaagtaagaccccacatgtacaaactcgtatgataagtag 12459  T
Q  381 gtgca 385  Q
    |||||    
T  12458 gtgca 12454  T

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Target: scaffold1017 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 278 - 437
Target Start/End: Complemental strand, 3069 - 2911
Alignment:
Q  278 gtagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataag 377  Q
    ||||||||||| ||| ||| |||||||| || || |||||   ||| |||||| |||||||| |||||||| ||||||||||||||||  ||||||| ||    
T  3069 gtagaaactctagtggaagattgcaact-gacagctggagggaaatcaacccaaacctctgacagagtaagaccccacacgtacaaacatgtgtgatcag 2971  T
Q  378 taggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcacttaaatagaa 437  Q
    || | ||| ||  ||| ||  |||  | ||||||||||||||||||||||||| ||||||    
T  2970 tatgcgcaccttgacatcttgtaggtagtaaaaccccacaaactcatcacttagatagaa 2911  T

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Target: scaffold1017; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 534
Target Start/End: Complemental strand, 2897 - 2825
Alignment:
Q  462 gaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaat 534  Q
    |||||||| |||||| |||||| ||| ||||||||||||| ||  || | |||||| ||||||| ||||||||    
T  2897 gaataatgtttgaccgttaatttattccaacaaatgaataaagaagatttgaagaatcctaaccgccgctaat 2825  T

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Target: scaffold0085 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 325 - 550
Target Start/End: Complemental strand, 22621 - 22407
Alignment:
Q  325 aacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagtaggtgcaactcaacagctcatagaaaataaaaccccacaaactcat 424  Q
    |||||| |||||||||| | |||| |||||||||||||| | |||||||| ||||||||||| |  |||| |  |||  | ||||| ||||| |||||||    
T  22621 aacccaaacctctgagatattaagaccccacacgtacaatctcgtgtgattagtaggtgcaatttgacagttggtaggtagtaaaatcccacgaactcat 22522  T
Q  425 cacttaaatagaagtcgtaaaaataaaaccaatatcagaataatgcttgaccattaattaatttcaacaaatgaatataggggactcgaagaaccctaac 524  Q
    |||||| ||||||| |||  |||          ||  |||||||||||||||||  | ||||||||||||||||||| |||||| |||||||| ||| ||    
T  22521 cacttagatagaagacgttgaaa----------att-gaataatgcttgaccatagaataatttcaacaaatgaatagaggggattcgaagaatccttac 22433  T
Q  525 caccgctaatattctgcaataaaaaa 550  Q
      ||| ||| | |||||||| |||||    
T  22432 tgccgataacaatctgcaatcaaaaa 22407  T

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Target: scaffold0085; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 23462 - 23426
Alignment:
Q  124 tctctcctcactctaagtctttagggtatgttttatt 160  Q
    |||||||||||||||||| ||||||||||||||||||    
T  23462 tctctcctcactctaagtttttagggtatgttttatt 23426  T

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Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 277 - 361
Target Start/End: Original strand, 71277 - 71361
Alignment:
Q  277 cgtagaaactctggtgtaa-ggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtac 361  Q
    ||||| ||||||||||||| |||||||||| ||||| |||||   ||| |||||  ||||||||||||||||| ||||||||||||    
T  71277 cgtaggaactctggtgtaaaggttgcaact-gatagctggagggcaatgaacccttacctctgagagagtaagaccccacacgtac 71361  T

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Target: scaffold0394 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 279 - 427
Target Start/End: Original strand, 13571 - 13718
Alignment:
Q  279 tagaaactctggtgtaaggttgcaactcgatagttggagcagaataaacccagacctctgagagagtaaggccccacacgtacaaacccgtgtgataagt 378  Q
    |||||||||  ||||||||||||||| |||||| |||||    || |||||| |||||| |||||||||| || |||| |||    | |||||||| |      
T  13571 tagaaactccagtgtaaggttgcaac-cgatagctggagggcgatgaacccacacctctaagagagtaagaccgcacatgtatgttctcgtgtgatcatc 13669  T
Q  379 aggtgcaactcaacagctcatagaaaataaaaccccacaaactcatcac 427  Q
    ||||||||||  ||||||  |||  | ||||||||||||||||||||||    
T  13670 aggtgcaacttgacagctggtaggtagtaaaaccccacaaactcatcac 13718  T

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Target: scaffold0394; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 13763 - 13818
Alignment:
Q  483 taatttcaacaaatgaatataggggactcgaagaaccctaaccaccgctaatattct 539  Q
    ||||| |||||||||||||  ||||| |||||||| ||||||||||||||| |||||    
T  13763 taattccaacaaatgaataacgggga-tcgaagaatcctaaccaccgctaacattct 13818  T

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