View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15461_low_6 (Length: 516)
Name: NF15461_low_6
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15461_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 20 - 501
Target Start/End: Complemental strand, 8764730 - 8764244
Alignment:
| Q |
20 |
aatctgcccaagcagctttttcttgtgggctacggcactttggaccaactgcatgtgtattttcttcacccttttttgctctctccatagcaatttcaag |
119 |
Q |
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| T |
8764730 |
aatctgcccaagcagctttttcttgtgggctacggcactttggaccaactgcatgtgtattttcttcacccttttttgctctctccatagcaatttcaag |
8764631 |
T |
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| Q |
120 |
tgaaactttgaaaaaatctgatttattttttatggtttgattgaaagcattattggttaaataatactcacatggttgaggataaggggtttggctacac |
219 |
Q |
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| T |
8764630 |
tgaaactttgaaaaaatctgatttactttttatggtttgattgaaagcattattggttaaataatactcacatggttgaggataaggggtttggctacac |
8764531 |
T |
|
| Q |
220 |
catgattttatggaacttaatgagtaaccataaacaatagtggagaaaagaaatggaaatattaaaagagttgttaccaaaggaaatgaagccat----t |
315 |
Q |
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| T |
8764530 |
catgattttatggaacttaatgagtaaccataaacaatagtggagaaaagaaatggaaatattaaaagagttgttaccaaaggaaatgaagccattgaat |
8764431 |
T |
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| Q |
316 |
gaaaaattattttagggtttggtttgatgagaaatttagagaagggtttatgaggttttggtttgattatgagtgaggtttatgtccttgattttagtgc |
415 |
Q |
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| T |
8764430 |
gaaaaatgattttagggtttggtttgatgagaaatttagagaagggtttatgaggttttggtttgattatgagtgaggtttatgtccttgattttagtgc |
8764331 |
T |
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| Q |
416 |
ctttatatagag-gnnnnnnngtggtggttaacatgtaaactatttgagactgctcaccatgtcatacttttccaacttagcctatg |
501 |
Q |
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| T |
8764330 |
ctttatatagagaaaaaaaaagtggtggttaaaatgtaaactatttgagactgctcaccatgtcatacttttccaacttagcctatg |
8764244 |
T |
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