View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15461_low_7 (Length: 499)
Name: NF15461_low_7
Description: NF15461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15461_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 223 - 473
Target Start/End: Original strand, 24485089 - 24485338
Alignment:
| Q |
223 |
tggctctagtgttttctaggtgaacttttgcggcaatgtggcccagtttctttatgctagccctgtcgac-ttgaaacgatgcgcaatcatatttgtaga |
321 |
Q |
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| T |
24485089 |
tggctctagtgttttctaggtgaacttttgcggcaatgtggcccagtttctttatgctagctctgtcgactttgaaacgatgcgcaatcatatttgtaga |
24485188 |
T |
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| Q |
322 |
atcttgtgaccatgagctgagtacaaaacctttgcaaaaatttgtagtctgttgattataaggtgttccacgaagtaaaatccgcaattgttggatcttt |
421 |
Q |
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| T |
24485189 |
atcttgagatcatgagctgagta-aaaacctttgcaaaaatttgtagtttgttgattataagacgttccacgaagt-aaacccgcaattgttggatcttt |
24485286 |
T |
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| Q |
422 |
tttacaacaatatgagatggtttccttaaattttgagcaatctccttcttta |
473 |
Q |
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| T |
24485287 |
tttacaacaatatgagatggtttccttaaatttggagcaatctccttcttta |
24485338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 24484987 - 24485090
Alignment:
| Q |
31 |
gtgaaacctactaggttagcaataccacacaaaaggagagtaactcaaacactttgtaaattaatcatgttttttatcttcatttcctaagttgtcaaca |
130 |
Q |
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| T |
24484987 |
gtgaaacctactaggttagcaataccacacaa--ggagagtaactcaaacactttgtaaattaatcatgttttttatcttcatttcctaagttgtcaaca |
24485084 |
T |
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| Q |
131 |
gaattg |
136 |
Q |
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| T |
24485085 |
gaattg |
24485090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 313 - 474
Target Start/End: Original strand, 24487490 - 24487651
Alignment:
| Q |
313 |
atttgtagaatcttgtgaccatgagctgagtacaaaacctttgcaaaaatttgtagtctgttgattataaggtgttccacgaagtaaaatccgcaattgt |
412 |
Q |
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| T |
24487490 |
atttatagaatcttgtgcacatgggctgagtacccaacctttgtaacaatttacagtttgttgattataaggcgttcgagggagtaaa-tcaacaattgt |
24487588 |
T |
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| Q |
413 |
t-ggatcttttttacaacaatatgagatggtttccttaaattttgagcaatctccttctttac |
474 |
Q |
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| T |
24487589 |
ttggatcttttttacaataatgtgggatggtttccttaaattttgaacaatctccttctttac |
24487651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24484122 - 24484159
Alignment:
| Q |
1 |
aatactcgcgaacaaacaaatctttaatttgtgaaacc |
38 |
Q |
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| T |
24484122 |
aatactcgcgaacaaacaaatctttaatttgtgaaacc |
24484159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 45210300 - 45210361
Alignment:
| Q |
407 |
aattgttggatcttttttacaacaatatgagatggtttccttaaattttgagcaatctcctt |
468 |
Q |
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| T |
45210300 |
aattgttggatccttcttacaacaatgtgggaaggtttccgtaaactctgagcaatctcctt |
45210361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 468
Target Start/End: Complemental strand, 5549776 - 5549622
Alignment:
| Q |
313 |
atttgtagaatcttgtgaccatgagctgagtacaaaacctttgcaaaaatttgtagtctgttgattataaggtgttccacgaagtaaaatccgcaattgt |
412 |
Q |
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| T |
5549776 |
atttgttggatcctgtgcccatgagctgagtactccacctttgcaacaatttgcagtttgttgattgtagggtgttccgggaagt-aaatctacgaccgt |
5549678 |
T |
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| Q |
413 |
tggatcttttttacaacaatatgagatggtttccttaaattttgagcaatctcctt |
468 |
Q |
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| T |
5549677 |
tggatcttttttacagcaatgcgggatgtttcctttaaatttcgaacaatctcctt |
5549622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 5549923 - 5549990
Alignment:
| Q |
54 |
accacacaaaaggagagtaactcaaacactttgtaaattaatcatgttttttatcttcatttcctaagtt |
123 |
Q |
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| T |
5549923 |
accagacaaaaggagagtgactcaagcacttagtaagttaatca--tcttttatcttcatttcctaagtt |
5549990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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