View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15462_low_2 (Length: 501)
Name: NF15462_low_2
Description: NF15462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15462_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 52515207 - 52515468
Alignment:
| Q |
1 |
aaaataatgttattacttgaaaactccgagactaattttgacgggttcttttgtaggctttgcctaacatgcaaaagtaaaatatttgtgcaccatgcat |
100 |
Q |
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| T |
52515207 |
aaaataatgttattacttgaaaaatccgagactaattttgacgggttcttttgtaggctttgtctaacatgtaaaagtaaaatatttgtgcaccatgcat |
52515306 |
T |
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| Q |
101 |
aagttaattttcaacaattcgatcaataaatcatatcatttttaatttaacggtggaatttcttgatccaattgtggaaataattgaatgcataatgtaa |
200 |
Q |
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| T |
52515307 |
aagttaattttcaacaatttgatcaataaatcatatcatttttaatttaacggtggaatttcttgatccaattgtgaaaataattgaatgcataatgtaa |
52515406 |
T |
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| Q |
201 |
gacttatcctttcttctgcatcatagacttgatct-ttttgtaattttatgatcattgacct |
261 |
Q |
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| T |
52515407 |
gacttatcctttcttctgcatcatagacttgatctcttttgtaattttatgatcattgacct |
52515468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 389 - 483
Target Start/End: Original strand, 52515658 - 52515752
Alignment:
| Q |
389 |
gccacttaacgttgaatgatgtgataaattattacagattagatcgtgtcatcatccaattgttgttgtgcccttgaccttttttgacctggtat |
483 |
Q |
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| T |
52515658 |
gccacttaacgttgaatgatgtgataaattattacagattagatcgtgtcatcatccaattgttgttgtgcccttgaccttttttgacctggtat |
52515752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 52515531 - 52515597
Alignment:
| Q |
262 |
agatcattctaacaaaacttcaatatccaattattttggttatgataataatatcaatatgaagaag |
328 |
Q |
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| T |
52515531 |
agatcattctaacaaaacttcaatatccaattattttggctatgataataatatcaatatgaagaag |
52515597 |
T |
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