View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15462_low_3 (Length: 423)

Name: NF15462_low_3
Description: NF15462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15462_low_3
NF15462_low_3
[»] chr3 (37 HSPs)
chr3 (289-404)||(3151975-3152090)
chr3 (289-404)||(28427472-28427587)
chr3 (369-404)||(8510316-8510351)
chr3 (369-404)||(12673869-12673904)
chr3 (369-404)||(16123242-16123277)
chr3 (289-404)||(10976999-10977114)
chr3 (289-404)||(20907321-20907436)
chr3 (369-404)||(275543-275578)
chr3 (369-404)||(7518311-7518346)
chr3 (369-404)||(13584105-13584140)
chr3 (369-404)||(19656767-19656802)
chr3 (369-404)||(22156031-22156066)
chr3 (369-404)||(29955400-29955435)
chr3 (369-404)||(30004554-30004589)
chr3 (369-404)||(30130258-30130293)
chr3 (289-324)||(35565589-35565624)
chr3 (369-404)||(37506968-37507003)
chr3 (369-404)||(39288763-39288798)
chr3 (369-404)||(39436972-39437007)
chr3 (369-404)||(45320844-45320879)
chr3 (369-404)||(50261804-50261839)
chr3 (289-319)||(3830155-3830185)
chr3 (288-318)||(12673931-12673961)
chr3 (289-319)||(19844530-19844560)
chr3 (370-404)||(28942627-28942661)
chr3 (288-325)||(28942848-28942885)
chr3 (290-319)||(30130453-30130482)
chr3 (369-402)||(40169519-40169552)
chr3 (289-356)||(51834629-51834696)
chr3 (289-325)||(8510235-8510271)
chr3 (289-325)||(10977284-10977320)
chr3 (289-325)||(20612841-20612877)
chr3 (289-325)||(22156236-22156272)
chr3 (369-401)||(25710739-25710771)
chr3 (289-325)||(37506888-37506924)
chr3 (289-325)||(39288841-39288877)
chr3 (289-325)||(39437052-39437088)
[»] chr6 (25 HSPs)
chr6 (289-404)||(7155818-7155933)
chr6 (289-356)||(5286863-5286930)
chr6 (289-404)||(15076068-15076183)
chr6 (289-404)||(31166891-31167006)
chr6 (289-404)||(32885694-32885809)
chr6 (289-404)||(33801607-33801722)
chr6 (369-404)||(8680877-8680912)
chr6 (369-404)||(11129302-11129337)
chr6 (369-404)||(14655634-14655669)
chr6 (369-404)||(17321418-17321453)
chr6 (369-404)||(17321551-17321586)
chr6 (369-404)||(17772014-17772049)
chr6 (369-404)||(24273939-24273974)
chr6 (369-404)||(30928909-30928944)
chr6 (369-404)||(31398405-31398440)
chr6 (370-404)||(317911-317945)
chr6 (370-404)||(14428751-14428785)
chr6 (369-403)||(19296271-19296305)
chr6 (289-319)||(21385533-21385563)
chr6 (369-401)||(494629-494661)
chr6 (289-325)||(543382-543418)
chr6 (289-325)||(7156103-7156139)
chr6 (289-325)||(8680796-8680832)
chr6 (289-325)||(12419881-12419917)
chr6 (289-325)||(24274074-24274110)
[»] chr4 (31 HSPs)
chr4 (289-404)||(51708891-51709006)
chr4 (369-404)||(27008271-27008306)
chr4 (289-404)||(50714429-50714544)
chr4 (289-325)||(123555-123591)
chr4 (289-325)||(50714261-50714297)
chr4 (369-404)||(9446188-9446223)
chr4 (369-404)||(13479371-13479406)
chr4 (369-404)||(18135979-18136014)
chr4 (369-404)||(27427944-27427979)
chr4 (369-404)||(36702101-36702136)
chr4 (369-404)||(49123187-49123222)
chr4 (369-404)||(55482334-55482369)
chr4 (289-319)||(123847-123877)
chr4 (289-319)||(2180241-2180271)
chr4 (291-325)||(6827569-6827603)
chr4 (370-404)||(11285605-11285639)
chr4 (289-319)||(14791520-14791550)
chr4 (370-404)||(22099775-22099809)
chr4 (289-319)||(36054099-36054129)
chr4 (289-319)||(46292600-46292630)
chr4 (289-319)||(54208482-54208512)
chr4 (371-404)||(13064260-13064293)
chr4 (289-318)||(51763152-51763181)
chr4 (289-325)||(6827817-6827853)
chr4 (376-404)||(12152356-12152384)
chr4 (289-325)||(15555524-15555560)
chr4 (369-401)||(29420404-29420436)
chr4 (289-325)||(35415576-35415612)
chr4 (289-325)||(35763668-35763704)
chr4 (289-325)||(41345874-41345910)
chr4 (289-325)||(41619920-41619956)
[»] chr2 (29 HSPs)
chr2 (289-404)||(38980117-38980232)
chr2 (369-404)||(7814470-7814505)
chr2 (369-404)||(7814603-7814638)
chr2 (369-404)||(8046430-8046465)
chr2 (369-403)||(10665084-10665118)
chr2 (370-404)||(24483500-24483534)
chr2 (289-404)||(37271966-37272081)
chr2 (369-405)||(14392993-14393029)
chr2 (369-404)||(19183884-19183919)
chr2 (369-404)||(23989937-23989972)
chr2 (369-404)||(26814092-26814127)
chr2 (369-404)||(40302077-40302112)
chr2 (369-404)||(41693866-41693901)
chr2 (369-404)||(41791119-41791154)
chr2 (369-404)||(43789055-43789090)
chr2 (369-404)||(44985722-44985757)
chr2 (289-319)||(3172041-3172071)
chr2 (289-319)||(7814686-7814716)
chr2 (289-319)||(12835346-12835376)
chr2 (288-356)||(17912723-17912791)
chr2 (289-319)||(32476116-32476146)
chr2 (370-404)||(38731929-38731963)
chr2 (289-356)||(19184063-19184130)
chr2 (289-318)||(40124987-40125016)
chr2 (289-325)||(5790579-5790615)
chr2 (289-325)||(16900149-16900185)
chr2 (289-325)||(16993540-16993576)
chr2 (289-325)||(26814172-26814208)
chr2 (289-325)||(37271760-37271796)
[»] chr1 (33 HSPs)
chr1 (289-404)||(18473293-18473408)
chr1 (369-404)||(2733285-2733320)
chr1 (369-404)||(48955929-48955964)
chr1 (370-404)||(24649452-24649486)
chr1 (370-404)||(45290559-45290593)
chr1 (289-404)||(32728913-32729028)
chr1 (369-405)||(4323930-4323966)
chr1 (369-405)||(14007588-14007624)
chr1 (369-404)||(990188-990223)
chr1 (369-404)||(3679725-3679760)
chr1 (369-404)||(7001760-7001795)
chr1 (369-404)||(10552177-10552212)
chr1 (369-404)||(12361112-12361147)
chr1 (369-404)||(15335158-15335193)
chr1 (369-404)||(26142521-26142556)
chr1 (369-404)||(31258441-31258476)
chr1 (369-404)||(41358527-41358562)
chr1 (369-404)||(41881195-41881230)
chr1 (289-319)||(16026887-16026917)
chr1 (289-319)||(16060834-16060864)
chr1 (370-404)||(18302247-18302281)
chr1 (370-404)||(29688296-29688330)
chr1 (369-403)||(32626758-32626792)
chr1 (289-319)||(33234567-33234597)
chr1 (370-404)||(48609459-48609493)
chr1 (289-319)||(50799151-50799181)
chr1 (289-356)||(990291-990358)
chr1 (289-325)||(7001840-7001876)
chr1 (291-319)||(18079421-18079449)
chr1 (376-404)||(19198812-19198840)
chr1 (289-325)||(19622960-19622996)
chr1 (289-325)||(26061977-26062013)
chr1 (289-325)||(41358390-41358426)
[»] scaffold0811 (2 HSPs)
scaffold0811 (369-404)||(1507-1542)
scaffold0811 (289-325)||(1587-1623)
[»] scaffold0179 (1 HSPs)
scaffold0179 (369-404)||(3156-3191)
[»] chr8 (27 HSPs)
chr8 (369-404)||(1163013-1163048)
chr8 (369-404)||(24187668-24187703)
chr8 (369-404)||(32040237-32040272)
chr8 (370-404)||(21125885-21125919)
chr8 (369-404)||(1408218-1408253)
chr8 (369-404)||(1525911-1525946)
chr8 (369-404)||(4375791-4375826)
chr8 (369-404)||(6146812-6146847)
chr8 (369-404)||(14495264-14495299)
chr8 (369-404)||(18549305-18549340)
chr8 (369-404)||(19494220-19494255)
chr8 (369-404)||(21509796-21509831)
chr8 (369-404)||(22917791-22917826)
chr8 (369-404)||(24954875-24954910)
chr8 (369-404)||(33636424-33636459)
chr8 (369-404)||(38930403-38930438)
chr8 (369-404)||(40066595-40066630)
chr8 (369-404)||(40493054-40493089)
chr8 (370-404)||(4017005-4017039)
chr8 (289-319)||(14847846-14847876)
chr8 (289-319)||(24814726-24814756)
chr8 (370-404)||(32418543-32418577)
chr8 (289-318)||(13232512-13232541)
chr8 (288-324)||(10873165-10873201)
chr8 (289-325)||(19494356-19494392)
chr8 (289-325)||(22917585-22917621)
chr8 (369-401)||(32195381-32195413)
[»] chr7 (32 HSPs)
chr7 (369-404)||(488814-488849)
chr7 (369-404)||(5308551-5308586)
chr7 (369-404)||(21223508-21223543)
chr7 (369-404)||(44403116-44403151)
chr7 (369-404)||(45073506-45073541)
chr7 (369-404)||(46304246-46304281)
chr7 (370-404)||(18311682-18311716)
chr7 (370-404)||(48358941-48358975)
chr7 (289-404)||(14738621-14738735)
chr7 (289-404)||(44508741-44508855)
chr7 (369-404)||(1007093-1007128)
chr7 (369-404)||(1559570-1559605)
chr7 (369-404)||(6108561-6108596)
chr7 (369-404)||(7432053-7432088)
chr7 (370-405)||(23816898-23816933)
chr7 (369-404)||(25547355-25547390)
chr7 (369-404)||(28911679-28911714)
chr7 (369-404)||(30709425-30709460)
chr7 (369-404)||(37372769-37372804)
chr7 (369-404)||(39719455-39719490)
chr7 (369-404)||(45021597-45021632)
chr7 (289-319)||(16941001-16941031)
chr7 (289-319)||(19758008-19758038)
chr7 (289-319)||(35470229-35470259)
chr7 (289-319)||(41054125-41054155)
chr7 (289-319)||(41054185-41054215)
chr7 (369-403)||(44344656-44344690)
chr7 (289-318)||(45021806-45021835)
chr7 (289-325)||(1006856-1006892)
chr7 (289-325)||(6108355-6108391)
chr7 (376-404)||(6846983-6847011)
chr7 (289-325)||(44508997-44509033)
[»] chr5 (30 HSPs)
chr5 (369-404)||(31037497-31037532)
chr5 (369-404)||(35167029-35167064)
chr5 (369-404)||(37090605-37090640)
chr5 (369-404)||(38496521-38496556)
chr5 (369-404)||(294056-294091)
chr5 (369-404)||(2217721-2217756)
chr5 (369-404)||(4203554-4203589)
chr5 (369-404)||(5950274-5950309)
chr5 (369-404)||(6118358-6118393)
chr5 (369-404)||(15635477-15635512)
chr5 (369-404)||(16038603-16038638)
chr5 (369-404)||(18046215-18046250)
chr5 (369-404)||(18633824-18633859)
chr5 (369-404)||(23382173-23382208)
chr5 (369-404)||(25779025-25779060)
chr5 (369-404)||(29151618-29151653)
chr5 (369-404)||(30888262-30888297)
chr5 (369-404)||(35166023-35166058)
chr5 (369-404)||(38962957-38962992)
chr5 (369-404)||(42207342-42207377)
chr5 (289-319)||(24443401-24443431)
chr5 (374-404)||(26071397-26071427)
chr5 (289-319)||(28213394-28213424)
chr5 (289-319)||(38555033-38555063)
chr5 (289-356)||(18633620-18633687)
chr5 (289-356)||(29172798-29172865)
chr5 (289-325)||(29172544-29172580)
chr5 (289-325)||(29875421-29875457)
chr5 (289-325)||(29875668-29875704)
chr5 (289-325)||(39379260-39379296)
[»] scaffold0370 (1 HSPs)
scaffold0370 (289-404)||(153-268)
[»] scaffold0021 (1 HSPs)
scaffold0021 (369-405)||(12284-12320)
[»] scaffold0712 (1 HSPs)
scaffold0712 (369-404)||(5311-5346)
[»] scaffold0709 (1 HSPs)
scaffold0709 (369-404)||(5331-5366)
[»] scaffold0123 (1 HSPs)
scaffold0123 (369-404)||(17907-17942)
[»] scaffold0016 (1 HSPs)
scaffold0016 (369-404)||(10257-10292)
[»] scaffold0005 (1 HSPs)
scaffold0005 (289-319)||(48180-48210)
[»] scaffold0373 (1 HSPs)
scaffold0373 (289-325)||(8568-8604)
[»] scaffold0159 (1 HSPs)
scaffold0159 (289-325)||(34952-34988)


Alignment Details
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 3152090 - 3151975
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||            ||||||||||||||||||||    
T  3152090 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaatttgtttttggtccctgcaaaattttttgtttttgaaaatagtctctgacccca 3151991  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  3151990 cttttgtgatgatttg 3151975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 28427587 - 28427472
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||            ||||||||||||||||||||    
T  28427587 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtctctgacccca 28427488  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  28427487 cttttgtgatgatttg 28427472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 8510316 - 8510351
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  8510316 gaaaatagtctctgaccccacttttgtgatgatttg 8510351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 12673904 - 12673869
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  12673904 gaaaatagtctctgaccccacttttgtgatgatttg 12673869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 16123242 - 16123277
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  16123242 gaaaatagtctctgaccccacttttgtgatgatttg 16123277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 10976999 - 10977114
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          |||||| ||||||||||||||            |||||||||| |||||||||    
T  10976999 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaaattgtttctggtccctgcaaaattttttgtttttgaaaatagtccctgacccca 10977098  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  10977099 cttttgtgatgatttg 10977114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 20907436 - 20907321
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    ||||||||||||||||||||||||||||||| |||            |||||||||||||||||||||            |||||||||| |||||||||    
T  20907436 cctgcaaatatgcctcattttggttttagtctctgtgaaaaaaaaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtccctgacccca 20907337  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  20907336 cttttgtgatgatttg 20907321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 275543 - 275578
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  275543 gaaaatagtccctgaccccacttttgtgatgatttg 275578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 7518346 - 7518311
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||| |||||||||||||||||||||    
T  7518346 gaaaatagtctctggccccacttttgtgatgatttg 7518311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 13584105 - 13584140
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  13584105 gaaaatagtccctgaccccacttttgtgatgatttg 13584140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 19656802 - 19656767
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  19656802 gaaaatagtccctgaccccacttttgtgatgatttg 19656767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 22156031 - 22156066
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  22156031 gaaaatagtccctgaccccacttttgtgatgatttg 22156066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 29955400 - 29955435
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  29955400 gaaaatagtccctgaccccacttttgtgatgatttg 29955435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 30004554 - 30004589
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  30004554 gaaaatagtccctgaccccacttttgtgatgatttg 30004589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 30130258 - 30130293
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||| |||||||||||||||||||||    
T  30130258 gaaaatagtctctggccccacttttgtgatgatttg 30130293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 35565589 - 35565624
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctgg 324  Q
    ||||||||||||||||||||||||||||||| ||||    
T  35565589 cctgcaaatatgcctcattttggttttagtctctgg 35565624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 37506968 - 37507003
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  37506968 gaaaatagtccctgaccccacttttgtgatgatttg 37507003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 39288798 - 39288763
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  39288798 gaaaatagtccctgaccccacttttgtgatgatttg 39288763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 39437007 - 39436972
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  39437007 gaaaatagtccctgaccccacttttgtgatgatttg 39436972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 45320879 - 45320844
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  45320879 gaaaatagtccctgaccccacttttgtgatgatttg 45320844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 50261839 - 50261804
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||| |||||||||||||||||||    
T  50261839 gaaaatagtctctgactccacttttgtgatgatttg 50261804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 3830155 - 3830185
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  3830155 cctgcaaatatgcctcattttggttttagtc 3830185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 318
Target Start/End: Complemental strand, 12673961 - 12673931
Alignment:
Q  288 tcctgcaaatatgcctcattttggttttagt 318  Q
    |||||||||||||||||||||||||||||||    
T  12673961 tcctgcaaatatgcctcattttggttttagt 12673931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 19844560 - 19844530
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  19844560 cctgcaaatatgcctcattttggttttagtc 19844530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 28942627 - 28942661
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||| ||||||||||||||||||||    
T  28942627 aaaatagtctctgatcccacttttgtgatgatttg 28942661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 28942885 - 28942848
Alignment:
Q  288 tcctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  28942885 tcctgcaaatatgcctcgttttggttttagtccctggt 28942848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 319
Target Start/End: Complemental strand, 30130482 - 30130453
Alignment:
Q  290 ctgcaaatatgcctcattttggttttagtc 319  Q
    ||||||||||||||||||||||||||||||    
T  30130482 ctgcaaatatgcctcattttggttttagtc 30130453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 369 - 402
Target Start/End: Complemental strand, 40169552 - 40169519
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatt 402  Q
    |||||||||| |||||||||||||||||||||||    
T  40169552 gaaaatagtccctgaccccacttttgtgatgatt 40169519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 51834629 - 51834696
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaa 356  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||    
T  51834629 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaattttgtttttggtccctgcaaaa 51834696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 8510235 - 8510271
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  8510235 cctgcaaatatgcctctttttggttttagtccctggt 8510271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 10977320 - 10977284
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  10977320 cctgcaaatatgcctcgttttggttttagtccctggt 10977284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 20612877 - 20612841
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  20612877 cctgcaaatatgcctcgttttggttttagtccctggt 20612841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 22156272 - 22156236
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  22156272 cctgcaaatatgcctcgttttggttttagtccctggt 22156236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 25710771 - 25710739
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgat 401  Q
    |||||||||||||||| ||||||||||||||||    
T  25710771 gaaaatagtctctgactccacttttgtgatgat 25710739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 37506888 - 37506924
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  37506888 cctgcaaatatgcctcgttttggttttagtccctggt 37506924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 39288877 - 39288841
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  39288877 cctgcaaatatgcctcgttttggttttagtccctggt 39288841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 39437088 - 39437052
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  39437088 cctgcaaatatgcctcgttttggttttagtccctggt 39437052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 7155818 - 7155933
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||            ||||||||| ||||||||||    
T  7155818 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtttctgacccca 7155917  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  7155918 cttttgtgatgatttg 7155933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 5286930 - 5286863
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaa 356  Q
    ||||||||||||||||||||||||||||||| |||||          |||||||||||||||||||||    
T  5286930 cctgcaaatatgcctcattttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaa 5286863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 15076183 - 15076068
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||            |||||||||| |||||||||    
T  15076183 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtccctgacccca 15076084  T
Q  389 cttttgtgatgatttg 404  Q
    ||||| ||||||||||    
T  15076083 cttttatgatgatttg 15076068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 31166891 - 31167006
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||            |||||||||| |||||||||    
T  31166891 cctgcaaatatgcctcgttttggttttagtccctggtaaaaataaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtccctgacccca 31166990  T
Q  389 cttttgtgatgatttg 404  Q
    |||||||||| |||||    
T  31166991 cttttgtgattatttg 31167006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 32885694 - 32885809
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||            |||||||||||||| ||| |    
T  32885694 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtctctgccccta 32885793  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  32885794 cttttgtgatgatttg 32885809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 33801722 - 33801607
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          ||||||||||||||||||||             |||||||||| |||||||||    
T  33801722 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaatttttttgtttttgaaaatagtccctgacccca 33801623  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  33801622 cttttgtgatgatttg 33801607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 8680877 - 8680912
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  8680877 gaaaatagtccctgaccccacttttgtgatgatttg 8680912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 11129302 - 11129337
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  11129302 gaaaatagtccctgaccccacttttgtgatgatttg 11129337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 14655669 - 14655634
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  14655669 gaaaatagtccctgaccccacttttgtgatgatttg 14655634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 17321453 - 17321418
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  17321453 gaaaatagtccctgaccccacttttgtgatgatttg 17321418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 17321586 - 17321551
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  17321586 gaaaatagtccctgaccccacttttgtgatgatttg 17321551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 17772014 - 17772049
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||| |||||||||||||||    
T  17772014 gaaaatagtctctgaccccatttttgtgatgatttg 17772049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 24273939 - 24273974
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  24273939 gaaaatagtccctgaccccacttttgtgatgatttg 24273974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 30928944 - 30928909
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  30928944 gaaaatagtccctgaccccacttttgtgatgatttg 30928909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 31398440 - 31398405
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  31398440 gaaaatagtccctgaccccacttttgtgatgatttg 31398405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 317911 - 317945
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||| ||||||||||||||||||||    
T  317911 aaaatagtctctgatcccacttttgtgatgatttg 317945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 14428751 - 14428785
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||| |||||||||||||||    
T  14428751 aaaatagtctctgaccccatttttgtgatgatttg 14428785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 403
Target Start/End: Complemental strand, 19296305 - 19296271
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgattt 403  Q
    |||||||||| ||||||||||||||||||||||||    
T  19296305 gaaaatagtccctgaccccacttttgtgatgattt 19296271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 21385563 - 21385533
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  21385563 cctgcaaatatgcctcattttggttttagtc 21385533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 494661 - 494629
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgat 401  Q
    |||||||||| ||||||||||||||||||||||    
T  494661 gaaaatagtccctgaccccacttttgtgatgat 494629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 543382 - 543418
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  543382 cctgcaaatatgcctcgttttggttttagtccctggt 543418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 7156139 - 7156103
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  7156139 cctgcaaatatgcctcgttttggttttagtccctggt 7156103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 8680796 - 8680832
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  8680796 cctgcaaatatgcctcgttttggttttagtccctggt 8680832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 12419917 - 12419881
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  12419917 cctgcaaatatgcctcgttttggttttagtccctggt 12419881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 24274110 - 24274074
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  24274110 cctgcaaatatgcctcgttttggttttagtccctggt 24274074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 51709006 - 51708891
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    ||||||||||||||||||||||||||||||| |||||          |||||||||||||||||||||            |||||||||| |||| ||||    
T  51709006 cctgcaaatatgcctcattttggttttagtctctggtaaaaaaaaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtccctgatccca 51708907  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  51708906 cttttgtgatgatttg 51708891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 27008306 - 27008271
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  27008306 gaaaatagtctctgaccccacttttgtgatgatttg 27008271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 50714544 - 50714429
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||| ||| |||||||||||||| |||||          |||||||||||||||||||||            |||||||||| |||||||||    
T  50714544 cctgcaaatatgtctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtccctgacccca 50714445  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  50714444 cttttgtgatgatttg 50714429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 123555 - 123591
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    ||||||||||||||||||||||||||||||| |||||    
T  123555 cctgcaaatatgcctcattttggttttagtccctggt 123591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 50714261 - 50714297
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    ||||||||||||||||||||||||||||||| |||||    
T  50714261 cctgcaaatatgcctcattttggttttagtccctggt 50714297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 9446223 - 9446188
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  9446223 gaaaatagtccctgaccccacttttgtgatgatttg 9446188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 13479371 - 13479406
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  13479371 gaaaatagtccctgaccccacttttgtgatgatttg 13479406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 18136014 - 18135979
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  18136014 gaaaatagtcactgaccccacttttgtgatgatttg 18135979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 27427944 - 27427979
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  27427944 gaaaatagtccctgaccccacttttgtgatgatttg 27427979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 36702101 - 36702136
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  36702101 gaaaatagtccctgaccccacttttgtgatgatttg 36702136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 49123222 - 49123187
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  49123222 gaaaatagtcactgaccccacttttgtgatgatttg 49123187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 55482369 - 55482334
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  55482369 gaaaatagtccctgaccccacttttgtgatgatttg 55482334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 123877 - 123847
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  123877 cctgcaaatatgcctcattttggttttagtc 123847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 2180241 - 2180271
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  2180241 cctgcaaatatgcctcattttggttttagtc 2180271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 6827569 - 6827603
Alignment:
Q  291 tgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||| ||||||||||||||||||||    
T  6827569 tgcaaatatgcctcgttttggttttagtcgctggt 6827603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 11285605 - 11285639
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||| |||||||||||||||    
T  11285605 aaaatagtctctgaccccatttttgtgatgatttg 11285639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 14791520 - 14791550
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  14791520 cctgcaaatatgcctcattttggttttagtc 14791550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 22099809 - 22099775
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||| |||||||||||||||    
T  22099809 aaaatagtctctgaccccatttttgtgatgatttg 22099775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 36054129 - 36054099
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  36054129 cctgcaaatatgcctcattttggttttagtc 36054099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 46292630 - 46292600
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  46292630 cctgcaaatatgcctcattttggttttagtc 46292600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 54208482 - 54208512
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  54208482 cctgcaaatatgcctcattttggttttagtc 54208512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 404
Target Start/End: Original strand, 13064260 - 13064293
Alignment:
Q  371 aaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||| |||||||||||||||||||||||||    
T  13064260 aaatagtccctgaccccacttttgtgatgatttg 13064293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 51763181 - 51763152
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagt 318  Q
    ||||||||||||||||||||||||||||||    
T  51763181 cctgcaaatatgcctcattttggttttagt 51763152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 6827853 - 6827817
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  6827853 cctgcaaatatgcctcgttttggttttagtccctggt 6827817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 12152384 - 12152356
Alignment:
Q  376 gtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||||||||||||    
T  12152384 gtctctgaccccacttttgtgatgatttg 12152356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 15555524 - 15555560
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  15555524 cctgcaaatatgcctcgttttggttttagtccctggt 15555560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Complemental strand, 29420436 - 29420404
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgat 401  Q
    ||||||||||||| |||||||||||||||||||    
T  29420436 gaaaatagtctctaaccccacttttgtgatgat 29420404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 35415612 - 35415576
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  35415612 cctgcaaatatgcctcgttttggttttagtccctggt 35415576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 35763668 - 35763704
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  35763668 cctgcaaatatgcctcgttttggttttagtccctggt 35763704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 41345874 - 41345910
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  41345874 cctgcaaatatgcctcgttttggttttagtccctggt 41345910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 41619920 - 41619956
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  41619920 cctgcaaatatgcctcgttttggttttagtccctggt 41619956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 38980232 - 38980117
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||            |||||||||| |||||||||    
T  38980232 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtccctgacccca 38980133  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  38980132 cttttgtgatgatttg 38980117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 7814505 - 7814470
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  7814505 gaaaatagtctctgaccccacttttgtgatgatttg 7814470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 7814638 - 7814603
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  7814638 gaaaatagtctctgaccccacttttgtgatgatttg 7814603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 8046430 - 8046465
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  8046430 gaaaatagtctctgaccccacttttgtgatgatttg 8046465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 403
Target Start/End: Original strand, 10665084 - 10665118
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgattt 403  Q
    |||||||||||||||||||||||||||||||||||    
T  10665084 gaaaatagtctctgaccccacttttgtgatgattt 10665118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 24483500 - 24483534
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||||||||||||||||||    
T  24483500 aaaatagtctctgaccccacttttgtgatgatttg 24483534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 37272081 - 37271966
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||            ||||||||||  ||||||||    
T  37272081 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtccatgacccca 37271982  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  37271981 cttttgtgatgatttg 37271966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 14393029 - 14392993
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttgt 405  Q
    |||||||||| ||||||||||||||||||||||||||    
T  14393029 gaaaatagtccctgaccccacttttgtgatgatttgt 14392993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 19183884 - 19183919
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  19183884 gaaaatagtccctgaccccacttttgtgatgatttg 19183919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 23989937 - 23989972
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  23989937 gaaaatagtccctgaccccacttttgtgatgatttg 23989972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 26814127 - 26814092
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  26814127 gaaaatagtccctgaccccacttttgtgatgatttg 26814092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 40302077 - 40302112
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  40302077 gaaaatagtccctgaccccacttttgtgatgatttg 40302112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 41693901 - 41693866
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  41693901 gaaaatagtccctgaccccacttttgtgatgatttg 41693866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 41791119 - 41791154
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  41791119 gaaaatagtccctgaccccacttttgtgatgatttg 41791154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 43789090 - 43789055
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  43789090 gaaaatagtccctgaccccacttttgtgatgatttg 43789055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 44985722 - 44985757
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  44985722 gaaaatagtccctgaccccacttttgtgatgatttg 44985757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 3172041 - 3172071
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  3172041 cctgcaaatatgcctcattttggttttagtc 3172071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 7814716 - 7814686
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  7814716 cctgcaaatatgcctcattttggttttagtc 7814686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 12835346 - 12835376
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  12835346 cctgcaaatatgcctcattttggttttagtc 12835376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 17912791 - 17912723
Alignment:
Q  288 tcctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaa 356  Q
    ||||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||    
T  17912791 tcctgcaaatatgcctcgttttggttttagtctctggtaaaaaaaaatttgtttttggtccctgcaaaa 17912723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 32476116 - 32476146
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  32476116 cctgcaaatatgcctcattttggttttagtc 32476146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 38731929 - 38731963
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||| |||||||||||||||||||||||||    
T  38731929 aaaatagtccctgaccccacttttgtgatgatttg 38731963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 19184130 - 19184063
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaa 356  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||    
T  19184130 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaa 19184063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 40124987 - 40125016
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagt 318  Q
    ||||||||||||||||||||||||||||||    
T  40124987 cctgcaaatatgcctcattttggttttagt 40125016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 5790579 - 5790615
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  5790579 cctgcaaatatgcctcgttttggttttagtccctggt 5790615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 16900185 - 16900149
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  16900185 cctgcaaatatgcctcgttttggttttagtccctggt 16900149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 16993576 - 16993540
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  16993576 cctgcaaatatgcctcgttttggttttagtccctggt 16993540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 26814208 - 26814172
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  26814208 cctgcaaatatgcctcgttttggttttagtccctggt 26814172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 37271760 - 37271796
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  37271760 cctgcaaatatgcctcgttttggttttagtccctggt 37271796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 18473293 - 18473408
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||            |||||||||| |||||||||    
T  18473293 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtccctgacccca 18473392  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  18473393 cttttgtgatgatttg 18473408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 2733285 - 2733320
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  2733285 gaaaatagtctctgaccccacttttgtgatgatttg 2733320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 48955964 - 48955929
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  48955964 gaaaatagtctctgaccccacttttgtgatgatttg 48955929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 24649452 - 24649486
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||||||||||||||||||    
T  24649452 aaaatagtctctgaccccacttttgtgatgatttg 24649486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 45290559 - 45290593
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||||||||||||||||||    
T  45290559 aaaatagtctctgaccccacttttgtgatgatttg 45290593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 32729028 - 32728913
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||            ||||||||||  ||||||||    
T  32729028 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtccatgacccca 32728929  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  32728928 cttttgtgatgatttg 32728913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 4323930 - 4323966
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttgt 405  Q
    |||||||||| ||||||||||||||||||||||||||    
T  4323930 gaaaatagtccctgaccccacttttgtgatgatttgt 4323966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 14007588 - 14007624
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttgt 405  Q
    |||||||||| ||||||||||||||||||||||||||    
T  14007588 gaaaatagtccctgaccccacttttgtgatgatttgt 14007624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 990188 - 990223
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  990188 gaaaatagtccctgaccccacttttgtgatgatttg 990223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 3679725 - 3679760
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  3679725 gaaaatagtccctgaccccacttttgtgatgatttg 3679760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 7001795 - 7001760
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  7001795 gaaaatagtccctgaccccacttttgtgatgatttg 7001760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 10552212 - 10552177
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||| ||||||||||||||||||||||||||    
T  10552212 gaaaatagtttctgaccccacttttgtgatgatttg 10552177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 12361112 - 12361147
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  12361112 gaaaatagtccctgaccccacttttgtgatgatttg 12361147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 15335193 - 15335158
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  15335193 gaaaatagtccctgaccccacttttgtgatgatttg 15335158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 26142521 - 26142556
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  26142521 gaaaatagtccctgaccccacttttgtgatgatttg 26142556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 31258441 - 31258476
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  31258441 gaaaatagtccctgaccccacttttgtgatgatttg 31258476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 41358562 - 41358527
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  41358562 gaaaatagtccctgaccccacttttgtgatgatttg 41358527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 41881195 - 41881230
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  41881195 gaaaatagtccctgaccccacttttgtgatgatttg 41881230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 16026917 - 16026887
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  16026917 cctgcaaatatgcctcattttggttttagtc 16026887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 16060864 - 16060834
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  16060864 cctgcaaatatgcctcattttggttttagtc 16060834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 18302281 - 18302247
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||| |||||||||||||||||||    
T  18302281 aaaatagtctctgactccacttttgtgatgatttg 18302247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 29688330 - 29688296
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||| |||||||||||||||||||||||||    
T  29688330 aaaatagtcactgaccccacttttgtgatgatttg 29688296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 403
Target Start/End: Complemental strand, 32626792 - 32626758
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgattt 403  Q
    |||||||||| ||||||||||||||||||||||||    
T  32626792 gaaaatagtccctgaccccacttttgtgatgattt 32626758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 33234567 - 33234597
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  33234567 cctgcaaatatgcctcattttggttttagtc 33234597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 48609493 - 48609459
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||| |||||||||||||||    
T  48609493 aaaatagtctctgaccccatttttgtgatgatttg 48609459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 50799151 - 50799181
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  50799151 cctgcaaatatgcctcattttggttttagtc 50799181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 990358 - 990291
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaa 356  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||    
T  990358 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaatttgtttttggtccctgcaaaa 990291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 7001876 - 7001840
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  7001876 cctgcaaatatgcctcgttttggttttagtccctggt 7001840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 319
Target Start/End: Original strand, 18079421 - 18079449
Alignment:
Q  291 tgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||    
T  18079421 tgcaaatatgcctcattttggttttagtc 18079449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 19198840 - 19198812
Alignment:
Q  376 gtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||||||||||||    
T  19198840 gtctctgaccccacttttgtgatgatttg 19198812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 19622996 - 19622960
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  19622996 cctgcaaatatgcctcgttttggttttagtccctggt 19622960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 26061977 - 26062013
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  26061977 cctgcaaatatgcctcgttttggttttagtccctggt 26062013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 41358390 - 41358426
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  41358390 cctgcaaatatgcctcgttttggttttagtccctggt 41358426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0811 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0811
Description:

Target: scaffold0811; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 1542 - 1507
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  1542 gaaaatagtctctgaccccacttttgtgatgatttg 1507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0811; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 1623 - 1587
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  1623 cctgcaaatatgcctcgttttggttttagtccctggt 1587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 3191 - 3156
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  3191 gaaaatagtctctgaccccacttttgtgatgatttg 3156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 1163013 - 1163048
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  1163013 gaaaatagtctctgaccccacttttgtgatgatttg 1163048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 24187668 - 24187703
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  24187668 gaaaatagtctctgaccccacttttgtgatgatttg 24187703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 32040272 - 32040237
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  32040272 gaaaatagtctctgaccccacttttgtgatgatttg 32040237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 21125919 - 21125885
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||||||||||||||||||    
T  21125919 aaaatagtctctgaccccacttttgtgatgatttg 21125885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 1408253 - 1408218
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  1408253 gaaaatagtcactgaccccacttttgtgatgatttg 1408218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 1525911 - 1525946
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  1525911 gaaaatagtccctgaccccacttttgtgatgatttg 1525946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 4375791 - 4375826
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  4375791 gaaaatagtccctgaccccacttttgtgatgatttg 4375826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 6146847 - 6146812
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  6146847 gaaaatagtccctgaccccacttttgtgatgatttg 6146812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 14495299 - 14495264
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  14495299 gaaaatagtccctgaccccacttttgtgatgatttg 14495264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 18549305 - 18549340
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||| |||||||||||||||    
T  18549305 gaaaatagtctctgaccccatttttgtgatgatttg 18549340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 19494220 - 19494255
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  19494220 gaaaatagtccctgaccccacttttgtgatgatttg 19494255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 21509796 - 21509831
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  21509796 gaaaatagtccctgaccccacttttgtgatgatttg 21509831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 22917826 - 22917791
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  22917826 gaaaatagtccctgaccccacttttgtgatgatttg 22917791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 24954910 - 24954875
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  24954910 gaaaatagtccctgaccccacttttgtgatgatttg 24954875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 33636424 - 33636459
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  33636424 gaaaatagtccctgaccccacttttgtgatgatttg 33636459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 38930403 - 38930438
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  38930403 gaaaatagtccctgaccccacttttgtgatgatttg 38930438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 40066595 - 40066630
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||| ||||||||||    
T  40066595 gaaaatagtctctgaccccacttttatgatgatttg 40066630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 40493054 - 40493089
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  40493054 gaaaatagtccctgaccccacttttgtgatgatttg 40493089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 4017005 - 4017039
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||| |||||||||||||||||||||||||    
T  4017005 aaaatagtccctgaccccacttttgtgatgatttg 4017039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 14847846 - 14847876
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  14847846 cctgcaaatatgcctcattttggttttagtc 14847876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 24814726 - 24814756
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  24814726 cctgcaaatatgcctcattttggttttagtc 24814756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 32418577 - 32418543
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||| |||||||||||||||    
T  32418577 aaaatagtctctgaccccatttttgtgatgatttg 32418543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 13232541 - 13232512
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagt 318  Q
    ||||||||||||||||||||||||||||||    
T  13232541 cctgcaaatatgcctcattttggttttagt 13232512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 10873201 - 10873165
Alignment:
Q  288 tcctgcaaatatgcctcattttggttttagtcgctgg 324  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  10873201 tcctgcaaatatgcctcattttggttttggtccctgg 10873165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 19494392 - 19494356
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  19494392 cctgcaaatatgcctcgttttggttttagtccctggt 19494356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 22917585 - 22917621
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  22917585 cctgcaaatatgcctcgttttggttttagtccctggt 22917621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 32195381 - 32195413
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgat 401  Q
    ||||||||||||||||||||||||| |||||||    
T  32195381 gaaaatagtctctgaccccacttttatgatgat 32195413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 488814 - 488849
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  488814 gaaaatagtctctgaccccacttttgtgatgatttg 488849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 5308586 - 5308551
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  5308586 gaaaatagtctctgaccccacttttgtgatgatttg 5308551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 21223508 - 21223543
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  21223508 gaaaatagtctctgaccccacttttgtgatgatttg 21223543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 44403151 - 44403116
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  44403151 gaaaatagtctctgaccccacttttgtgatgatttg 44403116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 45073541 - 45073506
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  45073541 gaaaatagtctctgaccccacttttgtgatgatttg 45073506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 46304281 - 46304246
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  46304281 gaaaatagtctctgaccccacttttgtgatgatttg 46304246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 18311682 - 18311716
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||||||||||||||||||    
T  18311682 aaaatagtctctgaccccacttttgtgatgatttg 18311716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 404
Target Start/End: Complemental strand, 48358975 - 48358941
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||||||||||||||||||    
T  48358975 aaaatagtctctgaccccacttttgtgatgatttg 48358941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 14738621 - 14738735
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    ||||||||||||||||||||||||||||||| |||||          ||||||||||||| |||||||            ||||||||||||| ||||||    
T  14738621 cctgcaaatatgcctcattttggttttagtc-ctggtaaaaaaaaatttgtttttggtccttgcaaaattttttgtttttgaaaatagtctctaacccca 14738719  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  14738720 cttttgtgatgatttg 14738735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 404
Target Start/End: Original strand, 44508741 - 44508855
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||            ||||||||||||||||||||    
T  44508741 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaat-ttgtttttggtccctgcaaaaatttttgtttttgaaaatagtctctgacccca 44508839  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||| ||||||||    
T  44508840 cttttgttatgatttg 44508855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 1007128 - 1007093
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  1007128 gaaaatagtccctgaccccacttttgtgatgatttg 1007093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 1559605 - 1559570
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  1559605 gaaaatagtccctgaccccacttttgtgatgatttg 1559570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 6108596 - 6108561
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  6108596 gaaaatagtccctgaccccacttttgtgatgatttg 6108561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 7432053 - 7432088
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  7432053 gaaaatagtccctgaccccacttttgtgatgatttg 7432088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 370 - 405
Target Start/End: Complemental strand, 23816933 - 23816898
Alignment:
Q  370 aaaatagtctctgaccccacttttgtgatgatttgt 405  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23816933 aaaatagtctctgaccccatttttgtgatgatttgt 23816898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 25547390 - 25547355
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||| |||||||||||||||    
T  25547390 gaaaatagtctctgaccccatttttgtgatgatttg 25547355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 28911679 - 28911714
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  28911679 gaaaatagtccctgaccccacttttgtgatgatttg 28911714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 30709425 - 30709460
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  30709425 gaaaatagtccctgaccccacttttgtgatgatttg 30709460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 37372804 - 37372769
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  37372804 gaaaatagtccctgaccccacttttgtgatgatttg 37372769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 39719455 - 39719490
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  39719455 gaaaatagtccctgaccccacttttgtgatgatttg 39719490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 45021597 - 45021632
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  45021597 gaaaatagtccctgaccccacttttgtgatgatttg 45021632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 16941031 - 16941001
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  16941031 cctgcaaatatgcctcattttggttttagtc 16941001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 19758038 - 19758008
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  19758038 cctgcaaatatgcctcattttggttttagtc 19758008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 35470259 - 35470229
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  35470259 cctgcaaatatgcctcattttggttttagtc 35470229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 41054155 - 41054125
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  41054155 cctgcaaatatgcctcattttggttttagtc 41054125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 41054215 - 41054185
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  41054215 cctgcaaatatgcctcattttggttttagtc 41054185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 403
Target Start/End: Complemental strand, 44344690 - 44344656
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgattt 403  Q
    |||||||||| ||||||||||||||||||||||||    
T  44344690 gaaaatagtcactgaccccacttttgtgatgattt 44344656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 45021835 - 45021806
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagt 318  Q
    ||||||||||||||||||||||||||||||    
T  45021835 cctgcaaatatgcctcattttggttttagt 45021806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 1006856 - 1006892
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  1006856 cctgcaaatatgcctcgttttggttttagtccctggt 1006892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 6108355 - 6108391
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  6108355 cctgcaaatatgcctcgttttggttttagtccctggt 6108391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 6847011 - 6846983
Alignment:
Q  376 gtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||||||||||||    
T  6847011 gtctctgaccccacttttgtgatgatttg 6846983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 44509033 - 44508997
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  44509033 cctgcaaatatgcctcgttttggttttagtccctggt 44508997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 31037497 - 31037532
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  31037497 gaaaatagtctctgaccccacttttgtgatgatttg 31037532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 35167064 - 35167029
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  35167064 gaaaatagtctctgaccccacttttgtgatgatttg 35167029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 37090640 - 37090605
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  37090640 gaaaatagtctctgaccccacttttgtgatgatttg 37090605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 38496521 - 38496556
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||||||||||||||||||||||||||||    
T  38496521 gaaaatagtctctgaccccacttttgtgatgatttg 38496556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 294091 - 294056
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  294091 gaaaatagtccctgaccccacttttgtgatgatttg 294056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 2217756 - 2217721
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  2217756 gaaaatagtccctgaccccacttttgtgatgatttg 2217721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 4203554 - 4203589
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  4203554 gaaaatagtccctgaccccacttttgtgatgatttg 4203589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 5950274 - 5950309
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    ||||||||||| ||||||||||||||||||||||||    
T  5950274 gaaaatagtctttgaccccacttttgtgatgatttg 5950309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 6118393 - 6118358
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  6118393 gaaaatagtccctgaccccacttttgtgatgatttg 6118358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 15635477 - 15635512
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  15635477 gaaaatagtccctgaccccacttttgtgatgatttg 15635512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 16038638 - 16038603
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||||||||||||| |||||    
T  16038638 gaaaatagtctctgaccccacttttgtgattatttg 16038603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 18046250 - 18046215
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||||||||||||| |||||    
T  18046250 gaaaatagtctctgaccccacttttgtgataatttg 18046215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 18633859 - 18633824
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  18633859 gaaaatagtccctgaccccacttttgtgatgatttg 18633824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 23382208 - 23382173
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  23382208 gaaaatagtccctgaccccacttttgtgatgatttg 23382173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 25779060 - 25779025
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  25779060 gaaaatagtccctgaccccacttttgtgatgatttg 25779025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 29151618 - 29151653
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  29151618 gaaaatagtccctgaccccacttttgtgatgatttg 29151653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 30888262 - 30888297
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  30888262 gaaaatagtccctgaccccacttttgtgatgatttg 30888297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 35166058 - 35166023
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  35166058 gaaaatagtccctgaccccacttttgtgatgatttg 35166023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 38962992 - 38962957
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  38962992 gaaaatagtccctgaccccacttttgtgatgatttg 38962957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 42207342 - 42207377
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  42207342 gaaaatagtccctgaccccacttttgtgatgatttg 42207377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 24443401 - 24443431
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  24443401 cctgcaaatatgcctcattttggttttagtc 24443431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 404
Target Start/End: Original strand, 26071397 - 26071427
Alignment:
Q  374 tagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||||||||||||||||||||||||    
T  26071397 tagtctctgaccccacttttgtgatgatttg 26071427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 28213394 - 28213424
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  28213394 cctgcaaatatgcctcattttggttttagtc 28213424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 38555063 - 38555033
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  38555063 cctgcaaatatgcctcattttggttttagtc 38555033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 18633620 - 18633687
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaa 356  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||    
T  18633620 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaa 18633687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 29172865 - 29172798
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaa 356  Q
    |||||||||||||||| |||||||||||||| |||||          |||||||||||||||||||||    
T  29172865 cctgcaaatatgcctcgttttggttttagtccctggtaaaaaagaatttgtttttggtccctgcaaaa 29172798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 29172544 - 29172580
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  29172544 cctgcaaatatgcctcgttttggttttagtccctggt 29172580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 29875421 - 29875457
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  29875421 cctgcaaatatgcctcgttttggttttagtccctggt 29875457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 29875704 - 29875668
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  29875704 cctgcaaatatgcctcgttttggttttagtccctggt 29875668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 39379260 - 39379296
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  39379260 cctgcaaatatgcctcgttttggttttagtccctggt 39379296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 404
Target Start/End: Complemental strand, 268 - 153
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggtnnnnnnnnnnttgtttttggtccctgcaaaannnnnnnnnnnngaaaatagtctctgacccca 388  Q
    |||||||||||| ||| |||||||||||||| |||||          |||||||||||||||||||||            |||||||||| |||||||||    
T  268 cctgcaaatatgtctcgttttggttttagtccctggtaaaaaaaaaattgtttttggtccctgcaaaattttttgtttttgaaaatagtccctgacccca 169  T
Q  389 cttttgtgatgatttg 404  Q
    ||||||||||||||||    
T  168 cttttgtgatgatttg 153  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 12284 - 12320
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttgt 405  Q
    |||||||||| ||||||||||||||||||||||||||    
T  12284 gaaaatagtccctgaccccacttttgtgatgatttgt 12320  T

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Target: scaffold0712 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 5311 - 5346
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  5311 gaaaatagtcactgaccccacttttgtgatgatttg 5346  T

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Target: scaffold0709 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 5331 - 5366
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  5331 gaaaatagtcactgaccccacttttgtgatgatttg 5366  T

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Target: scaffold0123 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Complemental strand, 17942 - 17907
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  17942 gaaaatagtccctgaccccacttttgtgatgatttg 17907  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 10257 - 10292
Alignment:
Q  369 gaaaatagtctctgaccccacttttgtgatgatttg 404  Q
    |||||||||| |||||||||||||||||||||||||    
T  10257 gaaaatagtccctgaccccacttttgtgatgatttg 10292  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 48210 - 48180
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtc 319  Q
    |||||||||||||||||||||||||||||||    
T  48210 cctgcaaatatgcctcattttggttttagtc 48180  T

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Target: scaffold0373 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 8568 - 8604
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  8568 cctgcaaatatgcctcgttttggttttagtccctggt 8604  T

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Target: scaffold0159 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 34952 - 34988
Alignment:
Q  289 cctgcaaatatgcctcattttggttttagtcgctggt 325  Q
    |||||||||||||||| |||||||||||||| |||||    
T  34952 cctgcaaatatgcctcgttttggttttagtccctggt 34988  T

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