View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15462_low_4 (Length: 342)
Name: NF15462_low_4
Description: NF15462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15462_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 8776227 - 8776538
Alignment:
| Q |
14 |
gaataccaccaacacatccaatgtggaggatgagaataattcctctgattcagatctgattattttggattcttatccaatttgtgaaaacacccctttc |
113 |
Q |
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| T |
8776227 |
gaataccaccaacacatccaatgtggaggatgagaataattcctctgattcagatctgattattttggattcttatccaatttgtgaaaacacccctttc |
8776326 |
T |
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| Q |
114 |
gtttcttcaaaaacatatgatacatcggtaaatatcttcaacttcacagtgtatctctatattaatgatattttgcaaacggtccacaaacatgcacgct |
213 |
Q |
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| T |
8776327 |
gtttcttcaaaaacatatgatacatcggtaaatatcttcaacttcacagtgtgtctctatattaatgatattttgcaaacggtccacaaacatgcacgct |
8776426 |
T |
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| Q |
214 |
gttccgnnnnnnnaaagaaacaaatccaaaaaattaatttttattttctcccataacacgtctttatgctatgtgtttttagtgttttggagataaaatg |
313 |
Q |
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| T |
8776427 |
gttccgtttttttaaagaaacaaatccaaaaaattaatttttattttctcccataacacgtctttatgctatgtgtttttagtgttttggagataaaatg |
8776526 |
T |
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| Q |
314 |
aaccccgaagac |
325 |
Q |
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|||||||||||| |
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| T |
8776527 |
aaccccgaagac |
8776538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 8787975 - 8788169
Alignment:
| Q |
14 |
gaataccaccaacacatccaatgtggaggatgagaataattcctctgattcagatctgattattttggattcttatccaatttgtgaaaacacccctttc |
113 |
Q |
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| T |
8787975 |
gaataccacaaacacacccacggtggaggatgggggtaattgctccgatccagatgttactattttggaaccttatcaagtttgtgaagatacccctttc |
8788074 |
T |
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| Q |
114 |
gtttcttcaaaaacatatgatacatcggtaaatatcttcaacttcacagtgtatctctatattaatgatattttgcaaacggtccacaaacatgcac |
210 |
Q |
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| T |
8788075 |
gttccttcaaaaagatatgattcatctgtaagtgtcttcaactttgcagtgta--cctgtattagtcatattttgctaatggtctacaaacatgcac |
8788169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 8782220 - 8782411
Alignment:
| Q |
17 |
taccaccaacacatccaatgtggaggatgagaataattcctctgattcagatctgattattttggattcttatccaatttgtgaaaacacccctttcgtt |
116 |
Q |
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|||||| ||||||||||| |||||||||| | || | |||| ||| ||||| | | ||||||| | |||||||||||||||||| | |||||||||| |
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| T |
8782220 |
taccacaaacacatccaaggtggaggatgggggtattccctccgatccagatgtaactattttgaaatcttatccaatttgtgaagctaaccctttcgtt |
8782319 |
T |
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| Q |
117 |
tcttcaaaaacatatgatacatcggtaaatatcttcaacttcacagtgtatctctatattaatgatattttgcaaacggtccacaaacatgcac |
210 |
Q |
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| T |
8782320 |
ccttcaaatatatatgattcatctgtaagtttcttcaactttacactg--tttctgtattagtaatatttttcaaatggtctacaaacatgcac |
8782411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 325
Target Start/End: Complemental strand, 2541449 - 2541135
Alignment:
| Q |
14 |
gaataccaccaacacatccaatgtggaggatgagaataattcctctgattcagatctgattattttggattcttatccaatttgtgaaaacacccctttc |
113 |
Q |
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|||| |||| ||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||||| |
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| T |
2541449 |
gaatgccactaacacatccaatgtggaggatgatagtaattcctctgattcagatctaattattttggattcttttccaatctgtggaaacacccctttc |
2541350 |
T |
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| Q |
114 |
gtttcttcaaaaacatatgatacatcggtaaatatcttcaactt--cacagtgtatctctatattaatgatattttgcaaacggtccacaaacatgcacg |
211 |
Q |
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||||||||||| ||||||||| |||| |||| | |||||||||| |||||| ||||||| ||||| | |||||||||||| | ||| ||||||||| | |
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| T |
2541349 |
gtttcttcaaagacatatgattcatcagtaagtgtcttcaactttgcacagtatatctctgtattagtcatattttgcaaatgatccttaaacatgcatg |
2541250 |
T |
|
| Q |
212 |
ctgttccg-nnnnnnnaaagaaacaaatccaaaaaattaatttttattttctcccataacacgtctttatgctatgtgtttttagtgttttggagataaa |
310 |
Q |
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|| ||| | ||||||| || |||||| | |||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
2541249 |
ctattcagtttttttaaaagaaaaaattccaaacagttaatttttaacttcttccataacacgtctttatgctatctgtttttagtgttttggagaagaa |
2541150 |
T |
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| Q |
311 |
atgaaccccgaagac |
325 |
Q |
| |
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| T |
2541149 |
acgaaccccgaagac |
2541135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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