View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15462_low_5 (Length: 341)
Name: NF15462_low_5
Description: NF15462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15462_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 9936686 - 9936395
Alignment:
| Q |
1 |
aaacggtaatttaaaagtttgtatctgtctctataaatgtcttccctnnnnnnnntagggatagcctcccaccaaacaacatctgctatgccatgaccat |
100 |
Q |
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||||||||||||| |||| |||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9936686 |
aaacggtaatttagaagtccgtatctgtctctataattgtcttccctaaaaata-tggggatagcctcccaccaaacaacatctgctatgccatgaccat |
9936588 |
T |
|
| Q |
101 |
gattcaccagcttatccgtgcaacaatttccttcacaaaaaagattaggaagcagattaattaatagtgactcaactgtagtgaatatttctatttcttc |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9936587 |
gattcactagcttatccgtgcaacaatttccttcacaaaaaagattagaaagcagattaaataatagtgactcaactgtagtgaatatttctatttcttc |
9936488 |
T |
|
| Q |
201 |
cgacaatatgcacaacaaccgaaaggaacaaacacaaagataaagaagacttaactacctttgctctcctacctactaatcatactatgttgc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9936487 |
cgacaatatgcacaacaaccgaaaggaacaaacacaaagataaagaaggcttaactacctttgctctcctacctactaatcatagtatgttgc |
9936395 |
T |
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